Literature DB >> 17011000

A new approach to reconstruction models of dendritic branching patterns.

Kenneth A Lindsay1, David J Maxwell, Jay R Rosenberg, Gayle Tucker.   

Abstract

Quantitative models for characterising the detailed branching patterns of dendritic trees aim to explain these patterns either in terms of growth models based on principles of dendritic development or reconstruction models that describe an existing structure by means of a canonical set of elementary properties of dendritic morphology, which when incorporated into an algorithmic procedure will generate samples of dendrites that are statistically indistinguishable in both canonical and emergent features from those of the original sample of real neurons. This article introduces a conceptually new approach to reconstruction modelling based on the single assumption that dendritic segments are built from sequences of units of constant diameter, and that the distribution of the lengths of units of similar diameter is independent of location within a dendritic tree. This assumption in combination with non-parametric methods for estimating univariate and multivariate probability densities leads to an algorithm that significantly reduces the number of basic parameters required to simulate dendritic morphology. It is not necessary to distinguish between stem and terminal segments or to specify daughter branch ratios or dendritic taper. The procedure of sampling probability densities conditioned on local morphological features eliminates the need, for example, to specify daughter branch ratios and dendritic taper since these emerge naturally as a consequence of the conditioning process. Thus several basic parameters of previous reconstruction algorithms become emergent parameters of the new reconstruction process. The new procedure was applied successfully to a sample of 51 interneurons from lamina II/III of the spinal dorsal horn.

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Year:  2006        PMID: 17011000     DOI: 10.1016/j.mbs.2006.08.005

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  7 in total

Review 1.  Successes and rewards in sharing digital reconstructions of neuronal morphology.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2007

2.  Non-parametric algorithmic generation of neuronal morphologies.

Authors:  Benjamin Torben-Nielsen; Stijn Vanderlooy; Eric O Postma
Journal:  Neuroinformatics       Date:  2008-09-17

3.  Models and simulation of 3D neuronal dendritic trees using Bayesian networks.

Authors:  Pedro L López-Cruz; Concha Bielza; Pedro Larrañaga; Ruth Benavides-Piccione; Javier DeFelipe
Journal:  Neuroinformatics       Date:  2011-12

4.  The interplay between branching and pruning on neuronal target search during developmental growth: functional role and implications.

Authors:  Remus Oşan; Emily Su; Troy Shinbrot
Journal:  PLoS One       Date:  2011-10-20       Impact factor: 3.240

5.  Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching.

Authors:  Zane Z Chou; Gene J Yu; Theodore W Berger
Journal:  Front Comput Neurosci       Date:  2020-04-09       Impact factor: 2.380

6.  Self-referential forces are sufficient to explain different dendritic morphologies.

Authors:  Heraldo Memelli; Benjamin Torben-Nielsen; James Kozloski
Journal:  Front Neuroinform       Date:  2013-01-30       Impact factor: 4.081

7.  Context-aware modeling of neuronal morphologies.

Authors:  Benjamin Torben-Nielsen; Erik De Schutter
Journal:  Front Neuroanat       Date:  2014-09-05       Impact factor: 3.856

  7 in total

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