Literature DB >> 17003863

Improved curve fitting procedures to determine equilibrium binding constants.

Frank H Stootman1, Dianne M Fisher, Alison Rodger, Janice R Aldrich-Wright.   

Abstract

For ligand-biomacromolecule titration experiments it has been traditional practice to extract parameters such as the equilibrium binding constant K and the number of bases per ligand binding site n with relatively labour intensive methods, usually based on single wavelength data, such as the difference method by Rodger and Nordén coupled together with a Scatchard plot. Presented in this paper are both the theory and a least squares fitting method to derive parameters such as K and n more directly from all spectral non-linear experimental data. Both the case of non competitive binding of a metal complex ligand to DNA and the case of displacement by a metal complex ligand of an ethidium marker attached to the DNA are considered. This work may be applied directly to reduce experimental data produced by a spectropolarimeter (for circular or linear dichroism) or a spectrophotometer (for fluorescence or UV-Vis spectroscopy).

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17003863     DOI: 10.1039/b604686j

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  14 in total

1.  Metallointercalators-DNA Tetrahedron Supramolecular Self-Assemblies with Increased Serum Stability.

Authors:  M Andrey Joaqui-Joaqui; Zoe Maxwell; Mandapati V Ramakrishnam Raju; Min Jiang; Kriti Srivastava; Fangwei Shao; Edgar A Arriaga; Valérie C Pierre
Journal:  ACS Nano       Date:  2022-02-08       Impact factor: 15.881

2.  Encapsulation of platinum(II)-based DNA intercalators within cucurbit[6,7,8]urils.

Authors:  Sharon Kemp; Nial J Wheate; Shaoyu Wang; J Grant Collins; Stephen F Ralph; Anthony I Day; Vincent J Higgins; Janice R Aldrich-Wright
Journal:  J Biol Inorg Chem       Date:  2007-07-25       Impact factor: 3.358

3.  PARACEST properties of a dinuclear neodymium(III) complex bound to DNA or carbonate.

Authors:  Kido Nwe; Christopher M Andolina; Ching-Hui Huang; Janet R Morrow
Journal:  Bioconjug Chem       Date:  2009-07       Impact factor: 4.774

4.  More is not always better: finding the right trade-off between affinity and selectivity of a G-quadruplex ligand.

Authors:  Michela Zuffo; Aurore Guédin; Emma-Dune Leriche; Filippo Doria; Valentina Pirota; Valérie Gabelica; Jean-Louis Mergny; Mauro Freccero
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

5.  Berberrubine Phosphate: A Selective Fluorescent Probe for Quadruplex DNA.

Authors:  Peter Jonas Wickhorst; Heiko Ihmels
Journal:  Molecules       Date:  2021-04-28       Impact factor: 4.411

6.  A comparative study of the interactions of cationic hetarenes with quadruplex-DNA forming oligonucleotide sequences of the insulin-linked polymorphic region (ILPR).

Authors:  Darinka Dzubiel; Heiko Ihmels; Mohamed M A Mahmoud; Laura Thomas
Journal:  Beilstein J Org Chem       Date:  2014-12-11       Impact factor: 2.883

7.  8-Styryl-substituted coralyne derivatives as DNA binding fluorescent probes.

Authors:  P M Pithan; D Decker; S I Druzhinin; H Ihmels; H Schönherr; Y Voß
Journal:  RSC Adv       Date:  2017-02-08       Impact factor: 3.361

8.  Synthesis of 9-arylalkynyl- and 9-aryl-substituted benzo[b]quinolizinium derivatives by Palladium-mediated cross-coupling reactions.

Authors:  Siva Sankar Murthy Bandaru; Darinka Dzubiel; Heiko Ihmels; Mohebodin Karbasiyoun; Mohamed M A Mahmoud; Carola Schulzke
Journal:  Beilstein J Org Chem       Date:  2018-07-23       Impact factor: 2.883

9.  Synthesis of Pyrazolone Derivatives and Their Nanometer Ag(I) Complexes and Physicochemical, DNA Binding, Antitumor, and Theoretical Implementations.

Authors:  Ismail Althagafi; Nashwa M El-Metwaly; Marwa G Elghalban; Thoraya A Farghaly; Abdalla M Khedr
Journal:  Bioinorg Chem Appl       Date:  2018-05-14       Impact factor: 7.778

10.  Reversible photoswitching of the DNA-binding properties of styrylquinolizinium derivatives through photochromic [2 + 2] cycloaddition and cycloreversion.

Authors:  Sarah Kölsch; Heiko Ihmels; Jochen Mattay; Norbert Sewald; Brian O Patrick
Journal:  Beilstein J Org Chem       Date:  2020-01-23       Impact factor: 2.883

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.