Literature DB >> 17001094

SPINE workshop on automated X-ray analysis: a progress report.

M Bahar1, C Ballard, S X Cohen, K D Cowtan, E J Dodson, P Emsley, R M Esnouf, R Keegan, V Lamzin, G Langer, V Levdikov, F Long, C Meier, A Muller, G N Murshudov, A Perrakis, C Siebold, N Stein, M G W Turkenburg, A A Vagin, M Winn, G Winter, K S Wilson.   

Abstract

The Structural Proteomics In Europe (SPINE) consortium contained a workpackage to address the automated X-ray analysis of macromolecules. The aim of this workpackage was to increase the throughput of three-dimensional structures while maintaining the high quality of conventional analyses. SPINE was able to bring together developers of software with users from the partner laboratories. Here, the results of a workshop organized by the consortium to evaluate software developed in the member laboratories against a set of bacterial targets are described. The major emphasis was on molecular-replacement suites, where automation was most advanced. Data processing and analysis, use of experimental phases and model construction were also addressed, albeit at a lower level.

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Year:  2006        PMID: 17001094     DOI: 10.1107/S0907444906032197

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

1.  Evidence for an allosteric mechanism of substrate release from membrane-transporter accessory binding proteins.

Authors:  Fabrizio Marinelli; Sonja I Kuhlmann; Ernst Grell; Hans-Jörg Kunte; Christine Ziegler; José D Faraldo-Gómez
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-14       Impact factor: 11.205

2.  Full domain closure of the ligand-binding core of the ionotropic glutamate receptor iGluR5 induced by the high affinity agonist dysiherbaine and the functional antagonist 8,9-dideoxyneodysiherbaine.

Authors:  Karla Frydenvang; L Leanne Lash; Peter Naur; Pekka A Postila; Darryl S Pickering; Caleb M Smith; Michael Gajhede; Makoto Sasaki; Ryuichi Sakai; Olli T Pentikaïnen; Geoffrey T Swanson; Jette S Kastrup
Journal:  J Biol Chem       Date:  2009-03-18       Impact factor: 5.157

3.  Structure of 5-formyltetrahydrofolate cyclo-ligase from Bacillus anthracis (BA4489).

Authors:  Christoph Meier; Lester G Carter; Graeme Winter; Ray J Owens; David I Stuart; Robert M Esnouf
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-02-23

4.  Nearest-cell: a fast and easy tool for locating crystal matches in the PDB.

Authors:  V Ramraj; G Evans; J M Diprose; R M Esnouf
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-11-09

5.  MrBUMP: an automated pipeline for molecular replacement.

Authors:  Ronan M Keegan; Martyn D Winn
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

6.  Fitting molecular fragments into electron density.

Authors:  Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
  6 in total

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