Literature DB >> 16997589

Design, construction and performance of the most efficient biomass producing E. coli bacterium.

Cong T Trinh1, Ross Carlson, Aaron Wlaschin, Friedrich Srienc.   

Abstract

Inverse metabolic engineering based on elementary mode analysis was applied to maximize the biomass yield of Escherchia coli MG1655. Elementary mode analysis was previously employed to identify among 1691 possible pathways for cell growth the most efficient pathway with maximum biomass yield. The metabolic network analysis predicted that deletion of only 6 genes reduces the number of possible elementary modes to the most efficient pathway. We have constructed a strain containing these gene deletions and we evaluated its properties in batch and in chemostat growth experiments. The results show that the theoretical predictions are closely matched by the properties of the designed strain.

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Year:  2006        PMID: 16997589     DOI: 10.1016/j.ymben.2006.07.006

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  30 in total

Review 1.  In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories.

Authors:  Paulo Maia; Miguel Rocha; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2015-11-25       Impact factor: 11.056

2.  On algebraic properties of extreme pathways in metabolic networks.

Authors:  Dimitrije Jevremovic; Cong T Trinh; Friedrich Srienc; Daniel Boley
Journal:  J Comput Biol       Date:  2010-02       Impact factor: 1.479

3.  Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity.

Authors:  Hans C Bernstein; Steven D Paulson; Ross P Carlson
Journal:  J Biotechnol       Date:  2011-10-12       Impact factor: 3.307

4.  Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses.

Authors:  Cong T Trinh; Pornkamol Unrean; Friedrich Srienc
Journal:  Appl Environ Microbiol       Date:  2008-04-18       Impact factor: 4.792

5.  Computing smallest intervention strategies for multiple metabolic networks in a boolean model.

Authors:  Wei Lu; Takeyuki Tamura; Jiangning Song; Tatsuya Akutsu
Journal:  J Comput Biol       Date:  2015-02       Impact factor: 1.479

Review 6.  Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies.

Authors:  Predrag Horvat; Martin Koller; Gerhart Braunegg
Journal:  World J Microbiol Biotechnol       Date:  2015-06-12       Impact factor: 3.312

7.  Parallelization of Nullspace Algorithm for the computation of metabolic pathways.

Authors:  Dimitrije Jevremović; Cong T Trinh; Friedrich Srienc; Carlos P Sosa; Daniel Boley
Journal:  Parallel Comput       Date:  2011-06       Impact factor: 0.986

8.  Redesigning Escherichia coli metabolism for anaerobic production of isobutanol.

Authors:  Cong T Trinh; Johnny Li; Harvey W Blanch; Douglas S Clark
Journal:  Appl Environ Microbiol       Date:  2011-06-03       Impact factor: 4.792

9.  Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design.

Authors:  Brett A Boghigian; Hai Shi; Kyongbum Lee; Blaine A Pfeifer
Journal:  BMC Syst Biol       Date:  2010-04-23

10.  Rational design and construction of an efficient E. coli for production of diapolycopendioic acid.

Authors:  Pornkamol Unrean; Cong T Trinh; Friedrich Srienc
Journal:  Metab Eng       Date:  2009-11-26       Impact factor: 9.783

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