Literature DB >> 16988107

A sequence-tagged linkage map of Brassica rapa.

Jung Sun Kim1, Tae Young Chung, Graham J King, Mina Jin, Tae-Jin Yang, Yong-Moon Jin, Ho-Il Kim, Beom-Seok Park.   

Abstract

A detailed genetic linkage map of Brassica rapa has been constructed containing 545 sequence-tagged loci covering 1287 cM, with an average mapping interval of 2.4 cM. The loci were identified using a combination of 520 RFLP and 25 PCR-based markers. RFLP probes were derived from 359 B. rapa EST clones and amplification products of 11 B. rapa and 26 Arabidopsis. Including 21 SSR markers provided anchors to previously published linkage maps for B. rapa and B. napus and is followed as the referenced mapping of R1-R10. The sequence-tagged markers allowed interpretation of the pattern of chromosome duplications within the B. rapa genome and comparison with Arabidopsis. A total of 62 EST markers showing a single RFLP band were mapped through 10 linkage groups, indicating that these can be valuable anchoring markers for chromosome-based genome sequencing of B. rapa. Other RFLP probes gave rise to 2-5 loci, inferring that B. rapa genome duplication is a general phenomenon through 10 chromosomes. The map includes five loci of FLC paralogues, which represent the previously reported BrFLC-1, -2, -3, and -5 and additionally identified BrFLC3 paralogues derived from local segmental duplication on R3.

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Year:  2006        PMID： 16988107      PMCID： PMC1569789          DOI： 10.1534/genetics.106.060152

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  35 in total

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Authors:  M J Truco; J Hu; J Sadowski; C F Quiros
Journal:  Theor Appl Genet       Date:  1996-12       Impact factor: 5.699

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Authors:  R A Teutonico; T C Osborn
Journal:  Theor Appl Genet       Date:  1994-12       Impact factor: 5.699

4.  Physical mapping and microsynteny of Brassica rapa ssp. pekinensis genome corresponding to a 222 kbp gene-rich region of Arabidopsis chromosome 4 and partially duplicated on chromosome 5.

Authors:  J Y Park; D H Koo; C P Hong; S J Lee; J W Jeon; S H Lee; P Y Yun; B S Park; H R Kim; J W Bang; P Plaha; I Bancroft; Y P Lim
Journal:  Mol Genet Genomics       Date:  2005-11-09       Impact factor: 3.291

5.  Analysis of expressed sequence tags from Brassica rapa L. ssp. pekinensis.

Authors:  J Y Lim; C S Shin; E J Chung; J S Kim; H U Kim; S J Oh; W B Choi; C S Ryou; J B Kim; M S Kwon; T Y Chung; S I Song; J K Kim; B H Nahm; Y S Hwang; M Y Eun; J S Lee; J J Cheong; Y D Choi
Journal:  Mol Cells       Date:  2000-08-31       Impact factor: 5.034

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Authors:  K. Suwabe; H. Iketani; T. Nunome; T. Kage; M. Hirai
Journal:  Theor Appl Genet       Date:  2002-04-05       Impact factor: 5.699

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Authors:  Joshua A Udall; Pablo A Quijada; Thomas C Osborn
Journal:  Genetics       Date:  2004-11-01       Impact factor: 4.562

8.  Comparative fluorescence in situ hybridization mapping of a 431-kb Arabidopsis thaliana bacterial artificial chromosome contig reveals the role of chromosomal duplications in the expansion of the Brassica rapa genome.

Authors:  S A Jackson; Z Cheng; M L Wang; H M Goodman; J Jiang
Journal:  Genetics       Date:  2000-10       Impact factor: 4.562

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10.  Alignment of the conserved C genomes of Brassica oleracea and Brassica napus.

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Journal:  Theor Appl Genet       Date:  1996-10       Impact factor: 5.699
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  55 in total

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Journal:  Theor Appl Genet       Date:  2012-03-28       Impact factor: 5.699

2.  Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers.

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Journal:  Theor Appl Genet       Date:  2011-08-04       Impact factor: 5.699

4.  Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors.

Authors:  Zhiyong Xiong; J Chris Pires
Journal:  Genetics       Date:  2010-11-01       Impact factor: 4.562

Review 5.  QTL analysis of leaf architecture.

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6.  Construction of a genetic map based on high-throughput SNP genotyping and genetic mapping of a TuMV resistance locus in Brassica rapa.

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8.  Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea.

Authors:  Martin R Broadley; John P Hammond; Graham J King; Dave Astley; Helen C Bowen; Mark C Meacham; Andrew Mead; David A C Pink; Graham R Teakle; Rory M Hayden; William P Spracklen; Philip J White
Journal:  Plant Physiol       Date:  2008-02-15       Impact factor: 8.340

9.  A naturally occurring splicing site mutation in the Brassica rapa FLC1 gene is associated with variation in flowering time.

Authors:  Yu-Xiang Yuan; Jian Wu; Ri-Fei Sun; Xiao-Wei Zhang; Dong-Hui Xu; Guusje Bonnema; Xiao-Wu Wang
Journal:  J Exp Bot       Date:  2009-02-03       Impact factor: 6.992

10.  PlantGM: a database for genetic markers in rice (Oryza sativa) and Chinese cabbage (Brassica rapa).

Authors:  Chang Kug Kim; Jung Sun Kim; Gang Seob Lee; Beom Seok Park; Jang Ho Hahn
Journal:  Bioinformation       Date:  2008-10-17
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