Literature DB >> 16986316

Evolutionary changes of metabolic networks and their biosynthetic capacities.

O Ebenhöh1, T Handorf, D Kahn.   

Abstract

The metabolic networks of different species show a large variety in their structural design. In this work, the evolution of functional properties of metabolism in relation with metabolic network structure is investigated. The metabolism of ancestral species is inferred from the metabolism of contemporary species using a Bayesian network model for metabolism evolution. Subsequently, these networks are analysed with the recently developed method of network expansion. This method allows for a structural analysis of metabolic networks as well as a quantification of network functions in terms of their synthesising capacities when they are provided with certain external resources. The evolutionary dynamics of one particular network function: the metabolic expansion of glucose is investigated.

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Year:  2006        PMID: 16986316     DOI: 10.1049/ip-syb:20060014

Source DB:  PubMed          Journal:  Syst Biol (Stevenage)        ISSN: 1741-2471


  9 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-11       Impact factor: 11.205

2.  Functional classification of genome-scale metabolic networks.

Authors:  Oliver Ebenhöh; Thomas Handorf
Journal:  EURASIP J Bioinform Syst Biol       Date:  2009-03-17

3.  Structural correlations in bacterial metabolic networks.

Authors:  Sebastian Bernhardsson; Philip Gerlee; Ludvig Lizana
Journal:  BMC Evol Biol       Date:  2011-01-20       Impact factor: 3.260

4.  Tradeoff between robustness and elaboration in carotenoid networks produces cycles of avian color diversification.

Authors:  Alexander V Badyaev; Erin S Morrison; Virginia Belloni; Michael J Sanderson
Journal:  Biol Direct       Date:  2015-08-20       Impact factor: 4.540

5.  Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks.

Authors:  Michaël Bekaert; Gavin C Conant
Journal:  PLoS One       Date:  2014-01-28       Impact factor: 3.240

6.  Cycles of external dependency drive evolution of avian carotenoid networks.

Authors:  Alexander V Badyaev; Alexander B Posner; Erin S Morrison; Dawn M Higginson
Journal:  Nat Commun       Date:  2019-04-08       Impact factor: 14.919

7.  Seeding Biochemistry on Other Worlds: Enceladus as a Case Study.

Authors:  Harrison B Smith; Alexa Drew; John F Malloy; Sara Imari Walker
Journal:  Astrobiology       Date:  2020-10-16       Impact factor: 4.335

8.  MetaPath Online: a web server implementation of the network expansion algorithm.

Authors:  Thomas Handorf; Oliver Ebenhöh
Journal:  Nucleic Acids Res       Date:  2007-05-05       Impact factor: 16.971

9.  Structuring evolution: biochemical networks and metabolic diversification in birds.

Authors:  Erin S Morrison; Alexander V Badyaev
Journal:  BMC Evol Biol       Date:  2016-08-25       Impact factor: 3.260

  9 in total

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