Literature DB >> 16986264

Robustness properties of apoptosis models with respect to parameter variations and intrinsic noise.

T Eissing1, F Allgöwer, E Bullinger.   

Abstract

Analyses of different robustness aspects for models of the direct signal transduction pathway of receptor-induced apoptosis is presented. Apoptosis is a form of programmed cell death, removing unwanted cells within multicellular organisms to maintain a proper balance between cell reproduction and death. Its signalling pathway includes an activation feedback loop that generates bistable behaviour, where the two steady states can be seen as 'life' and 'death'. Inherent robustness, widely recognised in biological systems, is of major importance in apoptosis signalling, as it guarantees the same cell fate for similar conditions. First, the influence of the stochastic nature of reactions indicating a role for inhibition reactions as noise filters and justifying a deterministic approach in the further analyses is evaluated. Second, the robustness of the bistable threshold with respect to parameter changes is evaluated by statistical methods, showing the need to balance both the forward and the back part of the activation loop. These analyses can also discriminate between the models favouring the model consistent with novel biological findings. The parameter robustness analyses are also applicable to other signal transduction networks, as several have been shown to display bistable behaviour. These methods therefore have a range of possible applications in systems biology not only to measure robustness, but also for model discrimination.

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Year:  2005        PMID: 16986264     DOI: 10.1049/ip-syb:20050046

Source DB:  PubMed          Journal:  Syst Biol (Stevenage)        ISSN: 1741-2471


  25 in total

1.  Architecture-dependent robustness and bistability in a class of genetic circuits.

Authors:  Jiajun Zhang; Zhanjiang Yuan; Han-Xiong Li; Tianshou Zhou
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

2.  Response to bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeability transition pores.

Authors:  Thomas Eissing; Steffen Waldherr; Frank Allgöwer; Peter Scheurich; Eric Bullinger
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

3.  Identifying fragilities in biochemical networks: robust performance analysis of Fas signaling-induced apoptosis.

Authors:  Jason E Shoemaker; Francis J Doyle
Journal:  Biophys J       Date:  2008-06-06       Impact factor: 4.033

4.  Identification of feedback loops embedded in cellular circuits by investigating non-causal impulse response components.

Authors:  Chao-Yi Dong; Tae-Woong Yoon; Declan G Bates; Kwang-Hyun Cho
Journal:  J Math Biol       Date:  2009-03-31       Impact factor: 2.259

5.  Computational analysis of dynamical responses to the intrinsic pathway of programmed cell death.

Authors:  Tongli Zhang; Paul Brazhnik; John J Tyson
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

6.  Modeling reveals that dynamic regulation of c-FLIP levels determines cell-to-cell distribution of CD95-mediated apoptosis.

Authors:  Hannu T Toivonen; Annika Meinander; Tomoko Asaoka; Mia Westerlund; Frank Pettersson; Andrey Mikhailov; John E Eriksson; Henrik Saxén
Journal:  J Biol Chem       Date:  2011-02-15       Impact factor: 5.157

Review 7.  Measuring and modeling apoptosis in single cells.

Authors:  Sabrina L Spencer; Peter K Sorger
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

8.  A framework for designing and analyzing binary decision-making strategies in cellular systems.

Authors:  Joshua R Porter; Burton W Andrews; Pablo A Iglesias
Journal:  Integr Biol (Camb)       Date:  2012-03-01       Impact factor: 2.192

9.  'Glocal' robustness analysis and model discrimination for circadian oscillators.

Authors:  Marc Hafner; Heinz Koeppl; Martin Hasler; Andreas Wagner
Journal:  PLoS Comput Biol       Date:  2009-10-16       Impact factor: 4.475

10.  Experimental testing of a mathematical model relevant to the extrinsic pathway of apoptosis.

Authors:  Vincenza Pace; Dina Bellizzi; Francesca Giordano; Maria Luisa Panno; Giovanna De Benedictis
Journal:  Cell Stress Chaperones       Date:  2009-05-20       Impact factor: 3.667

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