Literature DB >> 16984920

Structural basis for substrate binding and regioselective oxidation of monosaccharides at C3 by pyranose 2-oxidase.

Magdalena Kujawa1, Heidemarie Ebner, Christian Leitner, B Martin Hallberg, Methinee Prongjit, Jeerus Sucharitakul, Roland Ludwig, Ulla Rudsander, Clemens Peterbauer, Pimchai Chaiyen, Dietmar Haltrich, Christina Divne.   

Abstract

Pyranose 2-oxidase (P2Ox) participates in fungal lignin degradation by producing the H2O2 needed for lignin-degrading peroxidases. The enzyme oxidizes cellulose- and hemicellulose-derived aldopyranoses at C2 preferentially, but also on C3, to the corresponding ketoaldoses. To investigate the structural determinants of catalysis, covalent flavinylation, substrate binding, and regioselectivity, wild-type and mutant P2Ox enzymes were produced and characterized biochemically and structurally. Removal of the histidyl-FAD linkage resulted in a catalytically competent enzyme containing tightly, but noncovalently bound FAD. This mutant (H167A) is characterized by a 5-fold lower kcat, and a 35-mV lower redox potential, although no significant structural changes were seen in its crystal structure. In previous structures of P2Ox, the substrate loop (residues 452-457) covering the active site has been either disordered or in a conformation incompatible with carbohydrate binding. We present here the crystal structure of H167A in complex with a slow substrate, 2-fluoro-2-deoxy-D-glucose. Based on the details of 2-fluoro-2-deoxy-D-glucose binding in position for oxidation at C3, we also outline a probable binding mode for D-glucose positioned for regioselective oxidation at C2. The tentative determinant for discriminating between the two binding modes is the position of the O6 hydroxyl group, which in the C2-oxidation mode can make favorable interactions with Asp452 in the substrate loop and, possibly, a nearby arginine residue (Arg472). We also substantiate our hypothesis with steady-state kinetics data for the alanine replacements of Asp452 and Arg472 as well as the double alanine 452/472 mutant.

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Year:  2006        PMID: 16984920     DOI: 10.1074/jbc.M604718200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  23 in total

1.  Hydrogen peroxide elimination from C4a-hydroperoxyflavin in a flavoprotein oxidase occurs through a single proton transfer from flavin N5 to a peroxide leaving group.

Authors:  Jeerus Sucharitakul; Thanyaporn Wongnate; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2011-03-19       Impact factor: 5.157

2.  A conserved active-site threonine is important for both sugar and flavin oxidations of pyranose 2-oxidase.

Authors:  Warintra Pitsawong; Jeerus Sucharitakul; Methinee Prongjit; Tien-Chye Tan; Oliver Spadiut; Dietmar Haltrich; Christina Divne; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2010-01-20       Impact factor: 5.157

3.  Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.

Authors:  Alessandro R Ferrari; Henriëtte J Rozeboom; Justyna M Dobruchowska; Sander S van Leeuwen; Aniek S C Vugts; Martijn J Koetsier; Jaap Visser; Marco W Fraaije
Journal:  J Biol Chem       Date:  2016-09-14       Impact factor: 5.157

4.  Characterisation of recombinant pyranose oxidase from the cultivated mycorrhizal basidiomycete Lyophyllum shimeji (hon-shimeji).

Authors:  Clara Salaheddin; Yoshimitsu Takakura; Masako Tsunashima; Barbara Stranzinger; Oliver Spadiut; Montarop Yamabhai; Clemens K Peterbauer; Dietmar Haltrich
Journal:  Microb Cell Fact       Date:  2010-07-14       Impact factor: 5.328

5.  Evaluation of different expression systems for the heterologous expression of pyranose 2-oxidase from Trametes multicolor in E. coli.

Authors:  Oliver Spadiut; Gerald Posch; Roland Ludwig; Dietmar Haltrich; Clemens K Peterbauer
Journal:  Microb Cell Fact       Date:  2010-03-09       Impact factor: 5.328

6.  Oxidation mode of pyranose 2-oxidase is controlled by pH.

Authors:  Methinee Prongjit; Jeerus Sucharitakul; Bruce A Palfey; Pimchai Chaiyen
Journal:  Biochemistry       Date:  2013-02-12       Impact factor: 3.162

7.  Biosynthetic gene cluster of cetoniacytone A, an unusual aminocyclitol from the endosymbiotic Bacterium Actinomyces sp. Lu 9419.

Authors:  Xiumei Wu; Patricia M Flatt; Hui Xu; Taifo Mahmud
Journal:  Chembiochem       Date:  2009-01-26       Impact factor: 3.164

8.  Crystallographic, spectroscopic, and computational analysis of a flavin C4a-oxygen adduct in choline oxidase.

Authors:  Allen M Orville; George T Lountos; Steffan Finnegan; Giovanni Gadda; Rajeev Prabhakar
Journal:  Biochemistry       Date:  2009-02-03       Impact factor: 3.162

9.  Molecular dynamics simulations give insight into D-glucose dioxidation at C2 and C3 by Agaricus meleagris pyranose dehydrogenase.

Authors:  Michael M H Graf; Urban Bren; Dietmar Haltrich; Chris Oostenbrink
Journal:  J Comput Aided Mol Des       Date:  2013-04-17       Impact factor: 3.686

10.  The 1.6 Å crystal structure of pyranose dehydrogenase from Agaricus meleagris rationalizes substrate specificity and reveals a flavin intermediate.

Authors:  Tien Chye Tan; Oliver Spadiut; Thanyaporn Wongnate; Jeerus Sucharitakul; Iris Krondorfer; Christoph Sygmund; Dietmar Haltrich; Pimchai Chaiyen; Clemens K Peterbauer; Christina Divne
Journal:  PLoS One       Date:  2013-01-09       Impact factor: 3.240

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