Literature DB >> 16984181

Charge-transfer transitions in protein circular dichroism calculations.

Mark T Oakley1, Jonathan D Hirst.   

Abstract

Charge-transfer transitions in proteins play a key role in many biophysical processes, from the behavior of redox proteins to photochemical reactions. We present ab initio calculations on a model dipeptide and more approximate calculations of the electronic excited states of proteins which, taken together, provide the most definitive assignment and characterization of charge-transfer transitions in proteins to date. We have calculated from first principles the electronic circular dichroism (CD) spectra of 31 proteins on the basis of their structures. Compared to previous studies, we achieve more accurate calculated CD spectra between 170 and 190 nm, owing mainly to the importance in alpha-helices of a charge-transfer transition from the lone pair on one peptide group to the pi* orbital on the next peptide group.

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Year:  2006        PMID: 16984181     DOI: 10.1021/ja0644125

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  5 in total

1.  First-principles simulation of amide and aromatic side chain ultraviolet spectroscopy of a cyclic dipeptide.

Authors:  Zhenyu Li; Shaul Mukamel
Journal:  J Phys Chem A       Date:  2007-10-17       Impact factor: 2.781

2.  Two Dimensional Electronic Correlation Spectroscopy of the npi* and pipi* Protein Backbone Transitions: A Simulation Study.

Authors:  Zhenyu Li; Darius Abramavicius; Wei Zhuang; Shaul Mukamel
Journal:  Chem Phys       Date:  2007-11-15       Impact factor: 2.348

3.  Simulation study of chiral two-dimensional ultraviolet spectroscopy of the protein backbone.

Authors:  Darius Abramavicius; Jun Jiang; Benjamin M Bulheller; Jonathan D Hirst; Shaul Mukamel
Journal:  J Am Chem Soc       Date:  2010-06-09       Impact factor: 15.419

4.  Introducing DInaMo: A Package for Calculating Protein Circular Dichroism Using Classical Electromagnetic Theory.

Authors:  Igor V Uporov; Neville Y Forlemu; Rahul Nori; Tsvetan Aleksandrov; Boris A Sango; Yvonne E Bongfen Mbote; Sandeep Pothuganti; Kathryn A Thomasson
Journal:  Int J Mol Sci       Date:  2015-09-07       Impact factor: 5.923

5.  Near UV-Visible electronic absorption originating from charged amino acids in a monomeric protein.

Authors:  Saumya Prasad; Imon Mandal; Shubham Singh; Ashim Paul; Bhubaneswar Mandal; Ravindra Venkatramani; Rajaram Swaminathan
Journal:  Chem Sci       Date:  2017-05-19       Impact factor: 9.825

  5 in total

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