Literature DB >> 16984119

Immobilization and clustering of structurally defined oligosaccharides for sugar chips: an improved method for surface plasmon resonance analysis of protein-carbohydrate interactions.

Yasuo Suda1, Akio Arano, Yasuhiro Fukui, Shuhei Koshida, Masahiro Wakao, Tomoaki Nishimura, Shoichi Kusumoto, Michael Sobel.   

Abstract

Oligosaccharides are increasingly being recognized as important partners in receptor-ligand binding and cellular signaling. Surface plasmon resonance (SPR) is a very powerful tool for the real-time study of the specific interactions between biological molecules. We report here an advanced method for the immobilization of oligosaccharides in clustered structures for SPR and their application to the analysis of heparin-protein interactions. Reductive amination reactions and linker molecules were designed and optimized. Using mono-, tri-, or tetravalent linker compounds, we incorporated synthetic structurally defined disaccharide units of heparin and immobilized them as ligands for SPR. Their binding to an important hemostatic protein, von Willebrand factor (vWf), and its known heparin-binding domain was quantitatively analyzed. These multivalent ligand conjugates exhibited reproducible binding behavior, with consistency of the surface conditions of the SPR chip. This novel technique for oligosaccharide immobilization in SPR studies is accurate, specific, and easily applicable to both synthetic and naturally derived oligosaccharides.

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Year:  2006        PMID: 16984119     DOI: 10.1021/bc0600620

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  21 in total

1.  High-sensitivity analysis of naturally occurring sugar chains, using a novel fluorescent linker molecule.

Authors:  Masaki Sato; Yuji Ito; Naomichi Arima; Masanori Baba; Michael Sobel; Masahiro Wakao; Yasuo Suda
Journal:  J Biochem       Date:  2009-03-06       Impact factor: 3.387

2.  Towards the assembly of heparin and heparan sulfate oligosaccharide libraries: efficient synthesis of uronic acid and disaccharide building blocks.

Authors:  Akihiro Saito; Masahiro Wakao; Hiroshi Deguchi; Aya Mawatari; Michael Sobel; Yasuo Suda
Journal:  Tetrahedron       Date:  2010-05-29       Impact factor: 2.457

3.  Staphylococcus aureus SasA is responsible for binding to the salivary agglutinin gp340, derived from human saliva.

Authors:  Kenji Kukita; Miki Kawada-Matsuo; Takahiko Oho; Mami Nagatomo; Yuichi Oogai; Masahito Hashimoto; Yasuo Suda; Takuo Tanaka; Hitoshi Komatsuzawa
Journal:  Infect Immun       Date:  2013-02-25       Impact factor: 3.441

4.  Multiple mechanisms for exogenous heparin modulation of vascular endothelial growth factor activity.

Authors:  Errol Wijelath; Mayumi Namekata; Jacqueline Murray; Mai Furuyashiki; Siyuan Zhang; Daniel Coan; Masahiro Wakao; Robert B Harris; Yasuo Suda; Lianchun Wang; Michael Sobel
Journal:  J Cell Biochem       Date:  2010-10-01       Impact factor: 4.429

5.  Pseudoproteoglycan (pseudoPG) probes that simulate PG macromolecular structure for screening and isolation of PG-binding proteins.

Authors:  Keiko Nakagawa; Kosuke Nakamura; Yuji Haishima; Makiko Yamagami; Kana Saito; Hiromi Sakagami; Haruko Ogawa
Journal:  Glycoconj J       Date:  2009-11       Impact factor: 2.916

6.  Sugar Chips immobilized with synthetic sulfated disaccharides of heparin/heparan sulfate partial structure.

Authors:  Masahiro Wakao; Akihiro Saito; Koh Ohishi; Yuko Kishimoto; Tomoaki Nishimura; Michael Sobel; Yasuo Suda
Journal:  Bioorg Med Chem Lett       Date:  2008-01-19       Impact factor: 2.823

Review 7.  Systems biology coupled with label-free high-throughput detection as a novel approach for diagnosis of chronic obstructive pulmonary disease.

Authors:  Joanna L Richens; Richard A Urbanowicz; Elizabeth A M Lunt; Rebecca Metcalf; Jonathan Corne; Lucy Fairclough; Paul O'Shea
Journal:  Respir Res       Date:  2009-04-22

8.  Profiling heparin-chemokine interactions using synthetic tools.

Authors:  Jose L de Paz; E Ashley Moseman; Christian Noti; Laura Polito; Ulrich H von Andrian; Peter H Seeberger
Journal:  ACS Chem Biol       Date:  2007-11-20       Impact factor: 5.100

9.  Platelet adhesive dynamics. Part II: high shear-induced transient aggregation via GPIbalpha-vWF-GPIbalpha bridging.

Authors:  Nipa A Mody; Michael R King
Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

10.  Surface plasmon resonance study of protein-carbohydrate interactions using biotinylated sialosides.

Authors:  Matthew J Linman; Joseph D Taylor; Hai Yu; Xi Chen; Quan Cheng
Journal:  Anal Chem       Date:  2008-05-08       Impact factor: 6.986

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