Literature DB >> 16982730

Small molecules, big players: the National Cancer Institute's Initiative for Chemical Genetics.

Nicola Tolliday1, Paul A Clemons, Paul Ferraiolo, Angela N Koehler, Timothy A Lewis, Xiaohua Li, Stuart L Schreiber, Daniela S Gerhard, Scott Eliasof.   

Abstract

In 2002, the National Cancer Institute created the Initiative for Chemical Genetics (ICG), to enable public research using small molecules to accelerate the discovery of cancer-relevant small-molecule probes. The ICG is a public-access research facility consisting of a tightly integrated team of synthetic and analytical chemists, assay developers, high-throughput screening and automation engineers, computational scientists, and software developers. The ICG seeks to facilitate the cross-fertilization of synthetic chemistry and cancer biology by creating a research environment in which new scientific collaborations are possible. To date, the ICG has interacted with 76 biology laboratories from 39 institutions and more than a dozen organic synthetic chemistry laboratories around the country and in Canada. All chemistry and screening data are deposited into the ChemBank web site (http://chembank.broad.harvard.edu/) and are available to the entire research community within a year of generation. ChemBank is both a data repository and a data analysis environment, facilitating the exploration of chemical and biological information across many different assays and small molecules. This report outlines how the ICG functions, how researchers can take advantage of its screening, chemistry and informatic capabilities, and provides a brief summary of some of the many important research findings.

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Year:  2006        PMID: 16982730     DOI: 10.1158/0008-5472.CAN-06-2552

Source DB:  PubMed          Journal:  Cancer Res        ISSN: 0008-5472            Impact factor:   12.701


  20 in total

1.  A cell-based high-throughput screen validates the plasmodial surface anion channel as an antimalarial target.

Authors:  Ajay D Pillai; Margaret Pain; Tsione Solomon; Abdullah A B Bokhari; Sanjay A Desai
Journal:  Mol Pharmacol       Date:  2010-01-25       Impact factor: 4.436

2.  Macromolecular scaffolds for immobilizing small molecule microarrays in label-free detection of protein-ligand interactions on solid support.

Authors:  Y S Sun; J P Landry; Y Y Fei; X D Zhu; J T Luo; X B Wang; K S Lam
Journal:  Anal Chem       Date:  2009-07-01       Impact factor: 6.986

Review 3.  Cell-based assays for high-throughput screening.

Authors:  W Frank An; Nicola Tolliday
Journal:  Mol Biotechnol       Date:  2010-06       Impact factor: 2.695

4.  GPD: a graph pattern diffusion kernel for accurate graph classification with applications in cheminformatics.

Authors:  Aaron Smalter; Jun Luke Huan; Yi Jia; Gerald Lushington
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2010 Apr-Jun       Impact factor: 3.710

5.  Structurally sophisticated octahedral metal complexes as highly selective protein kinase inhibitors.

Authors:  Li Feng; Yann Geisselbrecht; Sebastian Blanck; Alexander Wilbuer; G Ekin Atilla-Gokcumen; Panagis Filippakopoulos; Katja Kräling; Mehmet Ali Celik; Klaus Harms; Jasna Maksimoska; Ronen Marmorstein; Gernot Frenking; Stefan Knapp; Lars-Oliver Essen; Eric Meggers
Journal:  J Am Chem Soc       Date:  2011-03-29       Impact factor: 15.419

6.  GPM: A Graph Pattern Matching Kernel with Diffusion for Chemical Compound Classification.

Authors:  Aaron Smalter; Jun Huan; Gerald Lushington
Journal:  Proc IEEE Int Symp Bioinformatics Bioeng       Date:  2008-12-08

7.  Application of kernel functions for accurate similarity search in large chemical databases.

Authors:  Xiaohong Wang; Jun Huan; Aaron Smalter; Gerald H Lushington
Journal:  BMC Bioinformatics       Date:  2010-04-29       Impact factor: 3.169

Review 8.  Probing the probes: fitness factors for small molecule tools.

Authors:  Paul Workman; Ian Collins
Journal:  Chem Biol       Date:  2010-06-25

9.  Targeting the human cancer pathway protein interaction network by structural genomics.

Authors:  Yuanpeng Janet Huang; Dehua Hang; Long Jason Lu; Liang Tong; Mark B Gerstein; Gaetano T Montelione
Journal:  Mol Cell Proteomics       Date:  2008-05-18       Impact factor: 5.911

Review 10.  Applications of high content screening in life science research.

Authors:  Joseph M Zock
Journal:  Comb Chem High Throughput Screen       Date:  2009-11       Impact factor: 1.339

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