Literature DB >> 16981724

Reaction of adenosylcobalamin-dependent glutamate mutase with 2-thiolglutarate.

Miri Yoon1, Anjali Patwardhan, Chunhua Qiao, Steven O Mansoorabadi, Ann L Menefee, George H Reed, E Neil G Marsh.   

Abstract

We have investigated the reaction of glutamate mutase with the glutamate analogue, 2-thiolglutarate. In the standard assay, 2-thiolglutarate behaves as a competitive inhibitor with a Ki of 0.05 mM. However, rather than simply binding inertly at the active site, 2-thiolglutarate elicits cobalt-carbon bond homolysis and the formation of 5'-deoxyadenosine. The enzyme exhibits a complicated EPR spectrum in the presence of 2-thiolglutarate that is markedly different from any previously observed with the enzyme. The spectrum was simulated well by assuming that it arises from electron-electron spin coupling between a thioglycolyl radical and low-spin Co2+ in cob(II)alamin. Analysis of the zero-field splitting parameters obtained from the simulations places the organic radical approximately 10 A from the cobalt and at a tilt angle of approximately 70 degrees to the normal of the corrin ring. This orientation is in good agreement with that expected from the crystal structure of glutamate mutase complexed with the substrate. 2-Thiolglutarate appears to react in a manner analogous to that of glutamate by first forming a thiolglutaryl radical at C-4 that then undergoes fragmentation to produce acrylate and the sulfur-stabilized thioglycolyl radical. The thioglycolyl radical accumulates on the enzyme, suggesting it is too stable to undergo further steps in the mechanism at a detectable rate.

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Year:  2006        PMID: 16981724      PMCID: PMC2517135          DOI: 10.1021/bi061067n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  33 in total

1.  Radical Shuttling in a Protein: Ribose Pseudorotation Controls Alkyl-Radical Transfer in the Coenzyme B(12) Dependent Enzyme Glutamate Mutase This work was supported by the Österreichische Akademie der Wissenschaften (APART fellowship 614), the Österreichische Fonds zur Förderung der wissenschaftlichen Forschung (FWF-project 11599), and the European Commission (TMR project number ERB 4061 PL 95-0307). Crystallographic data were collected at the EMBL-beamline BW7B at DESY in Hamburg, Germany. We thank the beamline scientists for their assistance, and Ingrid Dreveny, Günter Gartler, Gerwald Jogl, and Oliver Sauer for their help during data collection. This research emerged from a collaboration with Prof. W. Buckel (Marburg) who supplied us with clones of the glutamate mutase proteins.

Authors:  Karl Gruber; Riikka Reitzer; Christoph Kratky
Journal:  Angew Chem Int Ed Engl       Date:  2001-09-17       Impact factor: 15.336

Review 2.  Adenosylcobalamin-dependent isomerases: new insights into structure and mechanism.

Authors:  E N Marsh; C L Drennan
Journal:  Curr Opin Chem Biol       Date:  2001-10       Impact factor: 8.822

Review 3.  Radical mechanisms of enzymatic catalysis.

Authors:  P A Frey
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

4.  Adenosylcobalamin-dependent glutamate mutase: pre-steady-state kinetic methods for investigating reaction mechanism.

Authors:  Hung-Wei Chih; Ipsita Roymoulik; Marja S Huhta; Prashanti Madhavapeddi; E Neil G Marsh
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

5.  Photolysis and recombination of adenosylcobalamin bound to glutamate mutase.

Authors:  Roseanne J Sension; Allwyn G Cole; Ahmasi D Harris; Christel C Fox; Neal W Woodbury; Su Lin; E Neil G Marsh
Journal:  J Am Chem Soc       Date:  2004-02-18       Impact factor: 15.419

6.  Studies on the catalysis of carbon-cobalt bond homolysis by ribonucleoside triphosphate reductase: evidence for concerted carbon-cobalt bond homolysis and thiyl radical formation.

Authors:  S S Licht; S Booker; J Stubbe
Journal:  Biochemistry       Date:  1999-01-26       Impact factor: 3.162

7.  Adenosylcobalamin-dependent glutamate mutase: examination of substrate and coenzyme binding in an engineered fusion protein possessing simplified subunit structure and kinetic properties.

Authors:  H P Chen; E N Marsh
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

8.  Rearrangement of L-2-hydroxyglutarate to L-threo-3-methylmalate catalyzed by adenosylcobalamin-dependent glutamate mutase.

Authors:  I Roymoulik; N Moon; W R Dunham; D P Ballou; E N Marsh
Journal:  Biochemistry       Date:  2000-08-22       Impact factor: 3.162

9.  Glutamate mutase from Clostridium cochlearium: the structure of a coenzyme B12-dependent enzyme provides new mechanistic insights.

Authors:  R Reitzer; K Gruber; G Jogl; U G Wagner; H Bothe; W Buckel; C Kratky
Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

10.  Pre-steady-state kinetic studies on the Glu171Gln active site mutant of adenosylcobalamin-dependent glutamate mutase.

Authors:  Prashanti Madhavapeddi; David P Ballou; E Neil G Marsh
Journal:  Biochemistry       Date:  2002-12-31       Impact factor: 3.162

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  3 in total

Review 1.  Adenosylcobalamin enzymes: theory and experiment begin to converge.

Authors:  E Neil G Marsh; Gabriel D Román Meléndez
Journal:  Biochim Biophys Acta       Date:  2012-04-03

2.  Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase.

Authors:  Kirsten R Wolthers; Colin Levy; Nigel S Scrutton; David Leys
Journal:  J Biol Chem       Date:  2010-01-27       Impact factor: 5.157

Review 3.  Large-scale domain motions and pyridoxal-5'-phosphate assisted radical catalysis in coenzyme B12-dependent aminomutases.

Authors:  Amarendra Nath Maity; Yung-Han Chen; Shyue-Chu Ke
Journal:  Int J Mol Sci       Date:  2014-02-20       Impact factor: 5.923

  3 in total

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