Literature DB >> 16973479

Are liquid crystalline properties of nucleosomes involved in chromosome structure and dynamics?

Françoise Livolant1, Stéphanie Mangenot, Amélie Leforestier, Aurélie Bertin, Marta de Frutos, Eric Raspaud, Dominique Durand.   

Abstract

Nucleosome core particles correspond to the structural units of eukaryotic chromatin. They are charged colloids, 101 Angstrom in diameter and 55 Angstrom in length, formed by the coiling of a 146/147 bp DNA fragment (50 nm) around the histone protein octamer. Solutions of these particles can be concentrated, under osmotic pressure, up to the concentrations found in the nuclei of living cells. In the presence of monovalent cations (Na(+)), nucleosomes self-assemble into crystalline or liquid crystalline phases. A lamello-columnar phase is observed at 'low salt' concentrations, while a two-dimensional hexagonal phase and a three-dimensional quasi-hexagonal phase form at 'high salt' concentrations. We followed the formation of these phases from the dilute isotropic solutions to the ordered phases by combining cryoelectron microscopy and X-ray diffraction analyses. The phase diagram is presented as a function of the monovalent salt concentration and applied osmotic pressure. An alternative method to condense nucleosomes is to induce their aggregation upon addition of divalent or multivalent cations (Mg(2+), spermidine(3+) and spermine(4+)). Ordered phases are also found in the aggregates. We also discuss whether these condensed phases of nucleosomes may be relevant from a biological point of view.

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Year:  2006        PMID: 16973479     DOI: 10.1098/rsta.2006.1843

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  19 in total

1.  Birefringence and DNA condensation of liquid crystalline chromosomes.

Authors:  Man H Chow; Kosmo T H Yan; Michael J Bennett; Joseph T Y Wong
Journal:  Eukaryot Cell       Date:  2010-04-16

2.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

3.  The effect of internucleosomal interaction on folding of the chromatin fiber.

Authors:  René Stehr; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

4.  The Influence of Ionic Environment and Histone Tails on Columnar Order of Nucleosome Core Particles.

Authors:  Nikolay V Berezhnoy; Ying Liu; Abdollah Allahverdi; Renliang Yang; Chun-Jen Su; Chuan-Fa Liu; Nikolay Korolev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2016-04-26       Impact factor: 4.033

5.  H4 Tails Potentially Produce the Diversity in the Orientation of Two Nucleosomes.

Authors:  Hisashi Ishida; Hidetoshi Kono
Journal:  Biophys J       Date:  2017-09-05       Impact factor: 4.033

6.  Polarization-sensitive two-photon microscopy study of the organization of liquid-crystalline DNA.

Authors:  Halina Mojzisova; Joanna Olesiak; Marcin Zielinski; Katarzyna Matczyszyn; Dominique Chauvat; Joseph Zyss
Journal:  Biophys J       Date:  2009-10-21       Impact factor: 4.033

7.  Structure and phase diagram of nucleosome core particles aggregated by multivalent cations.

Authors:  Aurélie Bertin; Stéphanie Mangenot; Madalena Renouard; Dominique Durand; Françoise Livolant
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

Review 8.  Phase separation of DNA: From past to present.

Authors:  John T King; Anisha Shakya
Journal:  Biophys J       Date:  2021-02-12       Impact factor: 4.033

9.  An advanced coarse-grained nucleosome core particle model for computer simulations of nucleosome-nucleosome interactions under varying ionic conditions.

Authors:  Yanping Fan; Nikolay Korolev; Alexander P Lyubartsev; Lars Nordenskiöld
Journal:  PLoS One       Date:  2013-02-13       Impact factor: 3.240

10.  Structure of metaphase chromosomes: a role for effects of macromolecular crowding.

Authors:  Ronald Hancock
Journal:  PLoS One       Date:  2012-04-23       Impact factor: 3.240

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