Literature DB >> 16965007

Ab initio determination of the ionization potentials of DNA and RNA nucleobases.

Daniel Roca-Sanjuán1, Mercedes Rubio, Manuela Merchán, Luis Serrano-Andrés.   

Abstract

Quantum chemical high level ab initio coupled-cluster and multiconfigurational perturbation methods have been used to compute vertical and adiabatic ionization potentials of the five canonical DNA and RNA nucleobases: uracil, thymine, cytosine, adenine, and guanine. Several states of their cations have been also calculated. The present results represent a systematic compendium of these magnitudes, establishing theoretical reference values at a level not reported before, calibrating computational strategies, and guiding the assignment of the features in the experimental photoelectron spectra.

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Year:  2006        PMID: 16965007     DOI: 10.1063/1.2336217

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Comment on "Excited states of DNA base pairs using long-range corrected time-dependent density functional theory".

Authors:  Michael D Sevilla
Journal:  J Phys Chem A       Date:  2009-10-15       Impact factor: 2.781

2.  Interactions between Al₁₂X (X = Al, C, N and P) nanoparticles and DNA nucleobases/base pairs: implications for nanotoxicity.

Authors:  Peng Jin; Yongsheng Chen; Shengbai B Zhang; Zhongfang Chen
Journal:  J Mol Model       Date:  2011-05-06       Impact factor: 1.810

3.  Photooxidation of nucleic acids on metal oxides: physico-chemical and astrobiological perspectives.

Authors:  Ilya A Shkrob; Timothy M Marin; Amitava Adhikary; Michael D Sevilla
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2011-02-07       Impact factor: 4.126

4.  Spatial and Temporal Resolution of the Oxygen-Independent Photoinduced DNA Interstrand Cross-Linking by a Nitroimidazole Derivative.

Authors:  Abdelazim M A Abdelgawwad; Antonio Monari; Iñaki Tuñón; Antonio Francés-Monerris
Journal:  J Chem Inf Model       Date:  2022-06-30       Impact factor: 6.162

5.  Photophysical properties of pyrrolocytosine, a cytosine fluorescent base analogue.

Authors:  Quynh L Nguyen; Vincent A Spata; Spiridoula Matsika
Journal:  Phys Chem Chem Phys       Date:  2016-07-27       Impact factor: 3.676

6.  Benchmarking the Bethe-Salpeter Formalism on a Standard Organic Molecular Set.

Authors:  Denis Jacquemin; Ivan Duchemin; Xavier Blase
Journal:  J Chem Theory Comput       Date:  2015-07-14       Impact factor: 6.006

7.  Theoretical Study on the Photo-Oxidation and Photoreduction of an Azetidine Derivative as a Model of DNA Repair.

Authors:  Miriam Navarrete-Miguel; Antonio Francés-Monerris; Miguel A Miranda; Virginie Lhiaubet-Vallet; Daniel Roca-Sanjuán
Journal:  Molecules       Date:  2021-05-14       Impact factor: 4.411

8.  DNA/RNA transverse current sequencing: intrinsic structural noise from neighboring bases.

Authors:  Jose R Alvarez; Dmitry Skachkov; Steven E Massey; Alan Kalitsov; Julian P Velev
Journal:  Front Genet       Date:  2015-06-19       Impact factor: 4.599

9.  Sequence and conformation effects on ionization potential and charge distribution of homo-nucleobase stacks using M06-2X hybrid density functional theory calculations.

Authors:  Marianne Rooman; René Wintjens
Journal:  J Biomol Struct Dyn       Date:  2013-04-13

10.  Modelling Photoionisation in Isocytosine: Potential Formation of Longer-Lived Excited State Cations in its Keto Form.

Authors:  Javier Segarra-Martí; Michael J Bearpark
Journal:  Chemphyschem       Date:  2021-09-07       Impact factor: 3.102

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