Literature DB >> 16964270

Methods for predicting bacterial protein subcellular localization.

Jennifer L Gardy1, Fiona S L Brinkman.   

Abstract

The computational prediction of the subcellular localization of bacterial proteins is an important step in genome annotation and in the search for novel vaccine or drug targets. Since the 1991 release of PSORT I--the first comprehensive algorithm to predict bacterial protein localization--many other localization prediction tools have been developed. These methods offer significant improvements in predictive performance over PSORT I and the accuracy of some methods now rivals that of certain high-throughput laboratory methods for protein localization identification.

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Year:  2006        PMID: 16964270     DOI: 10.1038/nrmicro1494

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  55 in total

Review 1.  Two-dimensional gel electrophoresis in bacterial proteomics.

Authors:  Shirly O T Curreem; Rory M Watt; Susanna K P Lau; Patrick C Y Woo
Journal:  Protein Cell       Date:  2012-05-18       Impact factor: 14.870

2.  Human Protein Subcellular Localization with Integrated Source and Multi-label Ensemble Classifier.

Authors:  Xiaotong Guo; Fulin Liu; Ying Ju; Zhen Wang; Chunyu Wang
Journal:  Sci Rep       Date:  2016-06-21       Impact factor: 4.379

3.  Conservation of the Host-Interacting Proteins Tp0750 and Pallilysin among Treponemes and Restriction of Proteolytic Capacity to Treponema pallidum.

Authors:  Simon Houston; John S Taylor; Yavor Denchev; Rebecca Hof; Richard L Zuerner; Caroline E Cameron
Journal:  Infect Immun       Date:  2015-08-17       Impact factor: 3.441

4.  Computational prediction and experimental assessment of secreted/surface proteins from Mycobacterium tuberculosis H37Rv.

Authors:  Carolina Vizcaíno; Daniel Restrepo-Montoya; Diana Rodríguez; Luis F Niño; Marisol Ocampo; Magnolia Vanegas; María T Reguero; Nora L Martínez; Manuel E Patarroyo; Manuel A Patarroyo
Journal:  PLoS Comput Biol       Date:  2010-06-24       Impact factor: 4.475

5.  PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

Authors:  Nancy Y Yu; James R Wagner; Matthew R Laird; Gabor Melli; Sébastien Rey; Raymond Lo; Phuong Dao; S Cenk Sahinalp; Martin Ester; Leonard J Foster; Fiona S L Brinkman
Journal:  Bioinformatics       Date:  2010-05-13       Impact factor: 6.937

6.  Economical evolution: microbes reduce the synthetic cost of extracellular proteins.

Authors:  Daniel R Smith; Matthew R Chapman
Journal:  MBio       Date:  2010-08-24       Impact factor: 7.867

7.  Subcellular localization of marine bacterial alkaline phosphatases.

Authors:  Haiwei Luo; Ronald Benner; Richard A Long; Jianjun Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

Review 8.  Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.

Authors:  Juan Javier Díaz-Mejía; Mohan Babu; Andrew Emili
Journal:  FEMS Microbiol Rev       Date:  2008-11-27       Impact factor: 16.408

9.  Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach.

Authors:  Manuel J Rodríguez-Ortega; Inmaculada Luque; Carmen Tarradas; José A Bárcena
Journal:  BMC Genomics       Date:  2008-12-05       Impact factor: 3.969

10.  Horizontal gene transfer of the secretome drives the evolution of bacterial cooperation and virulence.

Authors:  Teresa Nogueira; Daniel J Rankin; Marie Touchon; François Taddei; Sam P Brown; Eduardo P C Rocha
Journal:  Curr Biol       Date:  2009-10-01       Impact factor: 10.834

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