Literature DB >> 16964210

Replacing cRNA targets with cDNA reduces microarray cross-hybridization.

Aron C Eklund, Leah R Turner, Pengchin Chen, Roderick V Jensen, Gianfranco deFeo, Anne R Kopf-Sill, Zoltan Szallasi.   

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Year:  2006        PMID： 16964210     DOI： 10.1038/nbt0906-1071

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  27 in total

1.  A novel method of amplification of FFPET-derived RNA enables accurate disease classification with microarrays.

Authors:  P Mickey Williams; Rui Li; Nathalie A Johnson; George Wright; Joe-Don Heath; Randy D Gascoyne
Journal:  J Mol Diagn       Date:  2010-08-05       Impact factor: 5.568

2.  Characterizing multiple exogenous and endogenous small RNA populations in parallel with subfemtomolar sensitivity using a streptavidin gel-shift assay.

Authors:  H Alexander Ebhardt; Peter J Unrau
Journal:  RNA       Date:  2009-02-23       Impact factor: 4.942

3.  DLK1-DIO3 genomic imprinted microRNA cluster at 14q32.2 defines a stemlike subtype of hepatocellular carcinoma associated with poor survival.

Authors:  John M Luk; Julja Burchard; Chunsheng Zhang; Angela M Liu; Kwong F Wong; Felix H Shek; Nikki P Lee; Sheung Tat Fan; Ronnie T Poon; Irena Ivanovska; Ulrike Philippar; Michele A Cleary; Carolyn A Buser; Peter M Shaw; Chuen-Neng Lee; Daniel G Tenen; Hongyue Dai; Mao Mao
Journal:  J Biol Chem       Date:  2011-07-07       Impact factor: 5.157

4.  Transcriptional response of Candida albicans biofilms following exposure to 2-amino-nonyl-6-methoxyl-tetralin muriate.

Authors:  Rong-mei Liang; Yong-bing Cao; You-jun Zhou; Yi Xu; Ping-hui Gao; Bao-di Dai; Feng Yang; Hui Tang; Yuan-ying Jiang
Journal:  Acta Pharmacol Sin       Date:  2010-04-12       Impact factor: 6.150

5.  cDNA targets improve whole blood gene expression profiling and enhance detection of pharmocodynamic biomarkers: a quantitative platform analysis.

Authors:  Mark L Parrish; Chris Wright; Yarek Rivers; David Argilla; Heather Collins; Brendan Leeson; Andrey Loboda; Michael Nebozhyn; Matthew J Marton; Serguei Lejnine
Journal:  J Transl Med       Date:  2010-09-25       Impact factor: 5.531

6.  microRNA-122 as a regulator of mitochondrial metabolic gene network in hepatocellular carcinoma.

Authors:  Julja Burchard; Chunsheng Zhang; Angela M Liu; Ronnie T P Poon; Nikki P Y Lee; Kwong-Fai Wong; Pak C Sham; Brian Y Lam; Mark D Ferguson; George Tokiwa; Ryan Smith; Brendan Leeson; Rebecca Beard; John R Lamb; Lee Lim; Mao Mao; Hongyue Dai; John M Luk
Journal:  Mol Syst Biol       Date:  2010-08-24       Impact factor: 11.429

7.  Cross-hybridization modeling on Affymetrix exon arrays.

Authors:  Karen Kapur; Hui Jiang; Yi Xing; Wing Hung Wong
Journal:  Bioinformatics       Date:  2008-11-04       Impact factor: 6.937

8.  Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization.

Authors:  Aron C Eklund; Pia Friis; Rasmus Wernersson; Zoltan Szallasi
Journal:  Nucleic Acids Res       Date:  2009-12-06       Impact factor: 16.971

9.  An efficient algorithm for the stochastic simulation of the hybridization of DNA to microarrays.

Authors:  Erdem Arslan; Ian J Laurenzi
Journal:  BMC Bioinformatics       Date:  2009-12-10       Impact factor: 3.169

10.  Gene expression profiling of whole blood: comparison of target preparation methods for accurate and reproducible microarray analysis.

Authors:  Kristina Vartanian; Rachel Slottke; Timothy Johnstone; Amanda Casale; Stephen R Planck; Dongseok Choi; Justine R Smith; James T Rosenbaum; Christina A Harrington
Journal:  BMC Genomics       Date:  2009-01-05       Impact factor: 3.969
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