Literature DB >> 16963627

Nonsense-mediated mRNA decay mutation in Aspergillus nidulans.

Igor Y Morozov1, Susana Negrete-Urtasun, Joan Tilburn, Christine A Jansen, Mark X Caddick, Herbert N Arst.   

Abstract

An Aspergillus nidulans mutation, designated nmdA1, has been selected as a partial suppressor of a frameshift mutation and shown to truncate the homologue of the Saccharomyces cerevisiae nonsense-mediated mRNA decay (NMD) surveillance component Nmd2p/Upf2p. nmdA1 elevates steady-state levels of premature termination codon-containing transcripts, as demonstrated using mutations in genes encoding xanthine dehydrogenase (hxA), urate oxidase (uaZ), the transcription factor mediating regulation of gene expression by ambient pH (pacC), and a protease involved in pH signal transduction (palB). nmdA1 can also stabilize pre-mRNA (unspliced) and wild-type transcripts of certain genes. Certain premature termination codon-containing transcripts which escape NMD are relatively stable, a feature more in common with certain nonsense codon-containing mammalian transcripts than with those in S. cerevisiae. As in S. cerevisiae, 5' nonsense codons are more effective at triggering NMD than 3' nonsense codons. Unlike the mammalian situation but in common with S. cerevisiae and other lower eukaryotes, A. nidulans is apparently impervious to the position of premature termination codons with respect to the 3' exon-exon junction.

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Year:  2006        PMID: 16963627      PMCID: PMC1694799          DOI: 10.1128/EC.00220-06

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  44 in total

1.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

Review 2.  Nonsense-mediated mRNA decay in mammals.

Authors:  Lynne E Maquat
Journal:  J Cell Sci       Date:  2005-05-01       Impact factor: 5.285

Review 3.  Genomics of the fungal kingdom: insights into eukaryotic biology.

Authors:  James E Galagan; Matthew R Henn; Li-Jun Ma; Christina A Cuomo; Bruce Birren
Journal:  Genome Res       Date:  2005-12       Impact factor: 9.043

Review 4.  Early nonsense: mRNA decay solves a translational problem.

Authors:  Nadia Amrani; Matthew S Sachs; Allan Jacobson
Journal:  Nat Rev Mol Cell Biol       Date:  2006-06       Impact factor: 94.444

Review 5.  Quality control of gene expression: a stepwise assembly pathway for the surveillance complex that triggers nonsense-mediated mRNA decay.

Authors:  Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Genes Dev       Date:  2006-02-15       Impact factor: 11.361

6.  Arginase induction in Aspergillus nidulans. The appearance and decay of the coding capacity of messenger.

Authors:  J Cybis; P Weglenski
Journal:  Eur J Biochem       Date:  1972-10

7.  Gene set coregulated by the Saccharomyces cerevisiae nonsense-mediated mRNA decay pathway.

Authors:  Rachel Taylor; Bessie Wanja Kebaara; Tara Nazarenus; Ashley Jones; Rena Yamanaka; Rachel Uhrenholdt; Jason P Wendler; Audrey L Atkin
Journal:  Eukaryot Cell       Date:  2005-12

8.  A defined sequence within the 3' UTR of the areA transcript is sufficient to mediate nitrogen metabolite signalling via accelerated deadenylation.

Authors:  I Y Morozov; M G Martinez; M G Jones; M X Caddick
Journal:  Mol Microbiol       Date:  2000-09       Impact factor: 3.501

9.  Novel Upf2p orthologues suggest a functional link between translation initiation and nonsense surveillance complexes.

Authors:  J T Mendell; S M Medghalchi; R G Lake; E N Noensie; H C Dietz
Journal:  Mol Cell Biol       Date:  2000-12       Impact factor: 4.272

10.  hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay.

Authors:  Jürgen Wittmann; Elly M Hol; Hans-Martin Jäck
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

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  7 in total

1.  Further characterization of the signaling proteolysis step in the Aspergillus nidulans pH signal transduction pathway.

Authors:  María M Peñas; América Hervás-Aguilar; Tatiana Múnera-Huertas; Elena Reoyo; Miguel A Peñalva; Herbert N Arst; Joan Tilburn
Journal:  Eukaryot Cell       Date:  2007-04-06

2.  Control of mRNA Stability in Fungi by NMD, EJC and CBC Factors Through 3'UTR Introns.

Authors:  Ying Zhang; Matthew S Sachs
Journal:  Genetics       Date:  2015-06-04       Impact factor: 4.562

3.  mRNA 3' tagging is induced by nonsense-mediated decay and promotes ribosome dissociation.

Authors:  Igor Y Morozov; Meriel G Jones; Peter D Gould; Victoria Crome; James B Wilson; Anthony J W Hall; Daniel J Rigden; Mark X Caddick
Journal:  Mol Cell Biol       Date:  2012-04-30       Impact factor: 4.272

4.  The Fusarium verticillioides FUM gene cluster encodes a Zn(II)2Cys6 protein that affects FUM gene expression and fumonisin production.

Authors:  Daren W Brown; Robert A E Butchko; Mark Busman; Robert H Proctor
Journal:  Eukaryot Cell       Date:  2007-05-04

Review 5.  Regulation of natural mRNAs by the nonsense-mediated mRNA decay pathway.

Authors:  Megan Peccarelli; Bessie W Kebaara
Journal:  Eukaryot Cell       Date:  2014-07-18

6.  RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum.

Authors:  Chunzhao Zhao; Cees Waalwijk; Pierre J G M de Wit; Dingzhong Tang; Theo van der Lee
Journal:  BMC Genomics       Date:  2013-01-16       Impact factor: 3.969

7.  Selection for reduced translation costs at the intronic 5' end in fungi.

Authors:  Zohar Zafrir; Hadas Zur; Tamir Tuller
Journal:  DNA Res       Date:  2016-06-02       Impact factor: 4.458

  7 in total

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