Literature DB >> 16963504

Disease-causing mutations in proteins: structural analysis of the CYP1B1 mutations causing primary congenital glaucoma in humans.

Malkaram S Achary1, Aramati B M Reddy, Subhabrata Chakrabarti, Shirly G Panicker, Anil K Mandal, Niyaz Ahmed, Dorairajan Balasubramanian, Seyed E Hasnain, Hampapathalu A Nagarajaram.   

Abstract

In this communication, we report an in-depth structure-based analysis of the human CYP1b1 protein carrying disease-causing mutations that are discovered in patients suffering from primary congenital glaucoma (PCG). The "wild-type" and the PCG mutant structures of the human CYP1b1 protein obtained from comparative modeling were subjected to long molecular dynamics simulations with an intention of studying the possible impact of these mutations on the protein structure and hence its function. Analysis of time evolution as well as time averaged values of various structural properties--especially of those of the functionally important regions: the heme binding region, substrate binding region, and substrate access channel--gave some insights into the possible structural characteristics of the disease mutant and the wild-type forms of the protein. In a nutshell, compared to the wild-type the core regions in the mutant structures are associated with subtle but significant changes, and the functionally important regions seem to adopt such structures that are not conducive for the wild-type-like functionality.

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Year:  2006        PMID: 16963504      PMCID: PMC1779944          DOI: 10.1529/biophysj.106.085498

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

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Authors:  H A Nagarajaram; B V Reddy; T L Blundell
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4.  How do substrates enter and products exit the buried active site of cytochrome P450cam? 1. Random expulsion molecular dynamics investigation of ligand access channels and mechanisms.

Authors:  S K Lüdemann; V Lounnas; R C Wade
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5.  How do substrates enter and products exit the buried active site of cytochrome P450cam? 2. Steered molecular dynamics and adiabatic mapping of substrate pathways.

Authors:  S K Lüdemann; V Lounnas; R C Wade
Journal:  J Mol Biol       Date:  2000-11-10       Impact factor: 5.469

6.  Linkage of autosomal recessive primary congenital glaucoma to the GLC3A locus in Roms (Gypsies) from Slovakia.

Authors:  M Plásilová; E Feráková; L Kádasi; H Poláková; A Gerinec; J Ott; V Ferák
Journal:  Hum Hered       Date:  1998 Jan-Feb       Impact factor: 0.444

Review 7.  Roles of cytochrome p450 in development.

Authors:  I Stoilov; I Jansson; M Sarfarazi; J B Schenkman
Journal:  Drug Metabol Drug Interact       Date:  2001

8.  Molecular characterisation of congenital glaucoma in a consanguineous Canadian community: a step towards preventing glaucoma related blindness.

Authors:  S N Martin; J Sutherland; A V Levin; R Klose; M Priston; E Héon
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9.  Novel compound heterozygous mutations in the cytochrome P4501B1 gene (CYP1B1) in a Japanese patient with primary congenital glaucoma.

Authors:  Y Ohtake; R Kubota; T Tanino; H Miyata; Y Mashima
Journal:  Ophthalmic Genet       Date:  2000-09       Impact factor: 1.803

10.  Mammalian microsomal cytochrome P450 monooxygenase: structural adaptations for membrane binding and functional diversity.

Authors:  P A Williams; J Cosme; V Sridhar; E F Johnson; D E McRee
Journal:  Mol Cell       Date:  2000-01       Impact factor: 17.970

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  19 in total

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Journal:  J Biosci       Date:  2008-12       Impact factor: 1.826

Review 2.  Biological roles of cytochrome P450 1A1, 1A2, and 1B1 enzymes.

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Journal:  Arch Pharm Res       Date:  2021-01-23       Impact factor: 4.946

3.  In silico analysis of five missense mutations in CYP1B1 gene in Pakistani families affected with primary congenital glaucoma.

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Review 4.  Molecular complexity of primary open angle glaucoma: current concepts.

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Journal:  J Genet       Date:  2009-12       Impact factor: 1.166

5.  Interaction of polycyclic aromatic hydrocarbons with human cytochrome P450 1B1 in inhibiting catalytic activity.

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Journal:  Chem Res Toxicol       Date:  2008-12       Impact factor: 3.739

6.  Effects of single nucleotide polymorphisms on human N-acetyltransferase 2 structure and dynamics by molecular dynamics simulation.

Authors:  M Rajasekaran; Santhanam Abirami; Chinpan Chen
Journal:  PLoS One       Date:  2011-09-29       Impact factor: 3.240

7.  Primary Congenital Glaucoma and the Involvement of CYP1B1.

Authors:  Kiranpreet Kaur; Anil K Mandal; Subhabrata Chakrabarti
Journal:  Middle East Afr J Ophthalmol       Date:  2011-01

8.  Screening of CYP1B1 and LTBP2 genes in Saudi families with primary congenital glaucoma: genotype-phenotype correlation.

Authors:  Khaled K Abu-Amero; Essam A Osman; Ahmed Mousa; Joshua Wheeler; Benjamin Whigham; R Rand Allingham; Michael A Hauser; Saleh A Al-Obeidan
Journal:  Mol Vis       Date:  2011-11-12       Impact factor: 2.367

9.  Novel compound heterozygous mutations in CYP1B1 identified in a Chinese family with developmental glaucoma.

Authors:  Suping Cai; Daren Zhang; Xiaodong Jiao; Tingting Wang; Mengjie Fan; Yun Wang; James Fielding Hejtmancik; Xuyang Liu
Journal:  Mol Med Rep       Date:  2021-09-16       Impact factor: 2.952

10.  Mutation spectrum of CYP1B1 in North Indian congenital glaucoma patients.

Authors:  Mukesh Tanwar; Tanuj Dada; Ramanjit Sihota; Taposh K Das; Usha Yadav; Rima Dada
Journal:  Mol Vis       Date:  2009-06-13       Impact factor: 2.367

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