Literature DB >> 16962311

Peptides mediating interaction networks: new leads at last.

Victor Neduva1, Robert B Russell.   

Abstract

A growing number of protein interactions are found to be mediated by a large globular region in one protein binding to a comparatively short, peptide stretch in another. Regions that bind a common protein often show a similar sequence pattern or linear motif that mediates the binding. The past year has seen reports of new techniques that can uncover these motifs directly from interaction data. These studies have suggested that the fraction of interactions mediated by these regions is greater than previously anticipated. Concurrently, other work has demonstrated that it is possible to target these interactions using small molecules. Together these developments hold great promise for future efforts to target chemically precise details of complex systems.

Mesh:

Substances:

Year:  2006        PMID: 16962311     DOI: 10.1016/j.copbio.2006.08.002

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  68 in total

1.  Proteome-wide detection of Abl1 SH3-binding peptides by integrating computational prediction and peptide microarray.

Authors:  Zheng Xu; Tingjun Hou; Nan Li; Yang Xu; Wei Wang
Journal:  Mol Cell Proteomics       Date:  2011-10-24       Impact factor: 5.911

2.  Host pathogen protein interactions predicted by comparative modeling.

Authors:  Fred P Davis; David T Barkan; Narayanan Eswar; James H McKerrow; Andrej Sali
Journal:  Protein Sci       Date:  2007-10-26       Impact factor: 6.725

3.  Regulation of the E3 ubiquitin ligase activity of MDM2 by an N-terminal pseudo-substrate motif.

Authors:  Erin G Worrall; Bartosz Wawrzynow; Liam Worrall; Malcolm Walkinshaw; Kathryn L Ball; Ted R Hupp
Journal:  J Chem Biol       Date:  2009-05-16

4.  Mechanism of intersubunit ketosynthase-dehydratase interaction in polyketide synthases.

Authors:  Matthew Jenner; Simone Kosol; Daniel Griffiths; Panward Prasongpholchai; Lucio Manzi; Andrew S Barrow; John E Moses; Neil J Oldham; Józef R Lewandowski; Gregory L Challis
Journal:  Nat Chem Biol       Date:  2018-01-08       Impact factor: 15.040

5.  Template-constrained macrocyclic peptides prepared from native, unprotected precursors.

Authors:  Kenneth V Lawson; Tristan E Rose; Patrick G Harran
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

6.  Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures.

Authors:  Amelie Stein; Patrick Aloy
Journal:  PLoS Comput Biol       Date:  2010-05-20       Impact factor: 4.475

7.  Accurate prediction of peptide binding sites on protein surfaces.

Authors:  Evangelia Petsalaki; Alexander Stark; Eduardo García-Urdiales; Robert B Russell
Journal:  PLoS Comput Biol       Date:  2009-03-27       Impact factor: 4.475

8.  Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs.

Authors:  Perry Evans; William Dampier; Lyle Ungar; Aydin Tozeren
Journal:  BMC Med Genomics       Date:  2009-05-18       Impact factor: 3.063

9.  A structure filter for the Eukaryotic Linear Motif Resource.

Authors:  Allegra Via; Cathryn M Gould; Christine Gemünd; Toby J Gibson; Manuela Helmer-Citterich
Journal:  BMC Bioinformatics       Date:  2009-10-24       Impact factor: 3.169

10.  PepX: a structural database of non-redundant protein-peptide complexes.

Authors:  Peter Vanhee; Joke Reumers; Francois Stricher; Lies Baeten; Luis Serrano; Joost Schymkowitz; Frederic Rousseau
Journal:  Nucleic Acids Res       Date:  2009-10-30       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.