Literature DB >> 16959964

The Yin and Yang of P-TEFb regulation: implications for human immunodeficiency virus gene expression and global control of cell growth and differentiation.

Qiang Zhou1, Jasper H N Yik.   

Abstract

The positive transcription elongation factor b (P-TEFb) stimulates transcriptional elongation by phosphorylating the carboxy-terminal domain of RNA polymerase II and antagonizing the effects of negative elongation factors. Not only is P-TEFb essential for transcription of the vast majority of cellular genes, but it is also a critical host cellular cofactor for the expression of the human immunodeficiency virus (HIV) type 1 genome. Given its important role in globally affecting transcription, P-TEFb's activity is dynamically controlled by both positive and negative regulators in order to achieve a functional equilibrium in sync with the overall transcriptional demand as well as the proliferative state of cells. Notably, this equilibrium can be shifted toward either the active or inactive state in response to diverse physiological stimuli that can ultimately affect the cellular decision between growth and differentiation. In this review, we examine the mechanisms by which the recently identified positive (the bromodomain protein Brd4) and negative (the noncoding 7SK small nuclear RNA and the HEXIM1 protein) regulators of P-TEFb affect the P-TEFb-dependent transcriptional elongation. We also discuss the consequences of perturbations of the dynamic associations of these regulators with P-TEFb in relation to the pathogenesis and progression of several major human diseases, such as cardiac hypertrophy, breast cancer, and HIV infection.

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Year:  2006        PMID: 16959964      PMCID: PMC1594588          DOI: 10.1128/MMBR.00011-06

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  120 in total

Review 1.  Bromodomains in living cells participate in deciphering the histone code.

Authors:  Alejandra Loyola; Genevieve Almouzni
Journal:  Trends Cell Biol       Date:  2004-06       Impact factor: 20.808

Review 2.  Transcriptional elongation control by RNA polymerase II: a new frontier.

Authors:  Ali Shilatifard
Journal:  Biochim Biophys Acta       Date:  2004-03-15

Review 3.  Elongation by RNA polymerase II: the short and long of it.

Authors:  Robert J Sims; Rimma Belotserkovskaya; Danny Reinberg
Journal:  Genes Dev       Date:  2004-10-15       Impact factor: 11.361

4.  CDK9/CYCLIN T1 expression during normal lymphoid differentiation and malignant transformation.

Authors:  Cristiana Bellan; Giulia De Falco; Stefano Lazzi; Pietro Micheli; Sonia Vicidomini; Karin Schürfeld; Teresa Amato; Annalisa Palumbo; Luigi Bagella; Elena Sabattini; Sabrina Bartolommei; Michael Hummel; Stefano Pileri; Piero Tosi; Lorenzo Leoncini; Antonio Giordano
Journal:  J Pathol       Date:  2004-08       Impact factor: 7.996

5.  Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing.

Authors:  Seong Hoon Ahn; Minkyu Kim; Stephen Buratowski
Journal:  Mol Cell       Date:  2004-01-16       Impact factor: 17.970

6.  Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitor.

Authors:  Annemieke A Michels; Alessandro Fraldi; Qintong Li; Todd E Adamson; François Bonnet; Van Trung Nguyen; Stanley C Sedore; Jason P Price; David H Price; Luigi Lania; Olivier Bensaude
Journal:  EMBO J       Date:  2004-06-17       Impact factor: 11.598

7.  Ablation of the CLP-1 gene leads to down-regulation of the HAND1 gene and abnormality of the left ventricle of the heart and fetal death.

Authors:  Facan Huang; Michael Wagner; M A Q Siddiqui
Journal:  Mech Dev       Date:  2004-06       Impact factor: 1.882

8.  Implication of BRG1 and cdk9 in the STAT3-mediated activation of the p21waf1 gene.

Authors:  Sandrine Giraud; Adam Hurlstone; Sylvie Avril; Olivier Coqueret
Journal:  Oncogene       Date:  2004-09-23       Impact factor: 9.867

9.  Phosphorylated positive transcription elongation factor b (P-TEFb) is tagged for inhibition through association with 7SK snRNA.

Authors:  Ruichuan Chen; Zhiyuan Yang; Qiang Zhou
Journal:  J Biol Chem       Date:  2003-11-19       Impact factor: 5.157

10.  A human immunodeficiency virus type 1 Tat-like arginine-rich RNA-binding domain is essential for HEXIM1 to inhibit RNA polymerase II transcription through 7SK snRNA-mediated inactivation of P-TEFb.

Authors:  Jasper H N Yik; Ruichuan Chen; Andrea C Pezda; Craig S Samford; Qiang Zhou
Journal:  Mol Cell Biol       Date:  2004-06       Impact factor: 4.272

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  144 in total

Review 1.  RNA polymerase II elongation control.

Authors:  Qiang Zhou; Tiandao Li; David H Price
Journal:  Annu Rev Biochem       Date:  2012-03-09       Impact factor: 23.643

2.  The viral protein Tat can inhibit the establishment of HIV-1 latency.

Authors:  Daniel A Donahue; Björn D Kuhl; Richard D Sloan; Mark A Wainberg
Journal:  J Virol       Date:  2012-01-11       Impact factor: 5.103

3.  Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression.

Authors:  Siddharth S Dey; Yuhua Xue; Marcin P Joachimiak; Gregory D Friedland; John C Burnett; Qiang Zhou; Adam P Arkin; David V Schaffer
Journal:  J Biol Chem       Date:  2012-01-17       Impact factor: 5.157

4.  P-TEFb kinase complex phosphorylates histone H1 to regulate expression of cellular and HIV-1 genes.

Authors:  Siobhan K O'Brien; Hong Cao; Robin Nathans; Akbar Ali; Tariq M Rana
Journal:  J Biol Chem       Date:  2010-06-15       Impact factor: 5.157

5.  HIV-1 Vif promotes the G₁- to S-phase cell-cycle transition.

Authors:  Jiangfang Wang; Emma L Reuschel; Jason M Shackelford; Lauren Jeang; Debra K Shivers; J Alan Diehl; Xiao-Fang Yu; Terri H Finkel
Journal:  Blood       Date:  2010-12-13       Impact factor: 22.113

6.  Mapping the disease protein interactome: toward a molecular medicine GPS to accelerate drug and biomarker discovery.

Authors:  Benoit Coulombe
Journal:  J Proteome Res       Date:  2010-11-15       Impact factor: 4.466

7.  Negative elongation factor (NELF) coordinates RNA polymerase II pausing, premature termination, and chromatin remodeling to regulate HIV transcription.

Authors:  Malini Natarajan; Gillian M Schiralli Lester; Chanhyo Lee; Anamika Missra; Gregory A Wasserman; Martin Steffen; David S Gilmour; Andrew J Henderson
Journal:  J Biol Chem       Date:  2013-07-24       Impact factor: 5.157

8.  Brd4 bridges the transcriptional regulators, Aire and P-TEFb, to promote elongation of peripheral-tissue antigen transcripts in thymic stromal cells.

Authors:  Hideyuki Yoshida; Kushagra Bansal; Uwe Schaefer; Trevor Chapman; Inmaculada Rioja; Irina Proekt; Mark S Anderson; Rab K Prinjha; Alexander Tarakhovsky; Christophe Benoist; Diane Mathis
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

Review 9.  Molecular mechanisms of HIV latency.

Authors:  Daniele C Cary; Koh Fujinaga; B Matija Peterlin
Journal:  J Clin Invest       Date:  2016-01-05       Impact factor: 14.808

10.  Visualization of positive transcription elongation factor b (P-TEFb) activation in living cells.

Authors:  Koh Fujinaga; Zeping Luo; Fred Schaufele; B Matija Peterlin
Journal:  J Biol Chem       Date:  2014-12-09       Impact factor: 5.157

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