Literature DB >> 16959888

Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system.

Fumio Inagaki1, Marcel M M Kuypers, Urumu Tsunogai, Jun-Ichiro Ishibashi, Ko-Ichi Nakamura, Tina Treude, Satoru Ohkubo, Miwako Nakaseama, Kaul Gena, Hitoshi Chiba, Hisako Hirayama, Takuro Nunoura, Ken Takai, Bo B Jørgensen, Koki Horikoshi, Antje Boetius.   

Abstract

Increasing levels of CO2 in the atmosphere are expected to cause climatic change with negative effects on the earth's ecosystems and human society. Consequently, a variety of CO2 disposal options are discussed, including injection into the deep ocean. Because the dissolution of CO2 in seawater will decrease ambient pH considerably, negative consequences for deep-water ecosystems have been predicted. Hence, ecosystems associated with natural CO2 reservoirs in the deep sea, and the dynamics of gaseous, liquid, and solid CO2 in such environments, are of great interest to science and society. We report here a biogeochemical and microbiological characterization of a microbial community inhabiting deep-sea sediments overlying a natural CO2 lake at the Yonaguni Knoll IV hydrothermal field, southern Okinawa Trough. We found high abundances (>10(9) cm(-3)) of microbial cells in sediment pavements above the CO2 lake, decreasing to strikingly low cell numbers (10(7) cm(-3)) at the liquid CO2/CO2-hydrate interface. The key groups in these sediments were as follows: (i) the anaerobic methanotrophic archaea ANME-2c and the Eel-2 group of Deltaproteobacteria and (ii) sulfur-metabolizing chemolithotrophs within the Gamma- and Epsilonproteobacteria. The detection of functional genes related to one-carbon assimilation and the presence of highly 13C-depleted archaeal and bacterial lipid biomarkers suggest that microorganisms assimilating CO2 and/or CH4 dominate the liquid CO2 and CO2-hydrate-bearing sediments. Clearly, the Yonaguni Knoll is an exceptional natural laboratory for the study of consequences of CO2 disposal as well as of natural CO2 reservoirs as potential microbial habitats on early Earth and other celestial bodies.

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Year:  2006        PMID: 16959888      PMCID: PMC1599929          DOI: 10.1073/pnas.0606083103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes.

Authors:  K Takai; K Horikoshi
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

2.  Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of Epsilonproteobacteria.

Authors:  Ken Takai; Barbara J Campbell; S Craig Cary; Masae Suzuki; Hanako Oida; Takuro Nunoura; Hisako Hirayama; Satoshi Nakagawa; Yohey Suzuki; Fumio Inagaki; Koki Horikoshi
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

3.  Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation.

Authors:  Satoshi Nakagawa; Ken Takai; Fumio Inagaki; Hitoshi Chiba; Jun-ichiro Ishibashi; Satoshi Kataoka; Hisako Hirayama; Takuro Nunoura; Koki Horikoshi; Yoshihiko Sako
Journal:  FEMS Microbiol Ecol       Date:  2005-09-01       Impact factor: 4.194

4.  Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

Authors:  Fumio Inagaki; Takuro Nunoura; Satoshi Nakagawa; Andreas Teske; Mark Lever; Antje Lauer; Masae Suzuki; Ken Takai; Mark Delwiche; Frederick S Colwell; Kenneth H Nealson; Koki Horikoshi; Steven D'Hondt; Bo B Jørgensen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

5.  Direct experiments on the ocean disposal of fossil fuel CO2

Authors: 
Journal:  Science       Date:  1999-05-07       Impact factor: 47.728

6.  Molecular fossil record of elevated methane levels in late Pleistocene coastal waters.

Authors:  Kai-Uwe Hinrichs; Laura R Hmelo; Sean P Sylva
Journal:  Science       Date:  2003-02-21       Impact factor: 47.728

7.  Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the epsilon-Proteobacteria isolated from Okinawa Trough hydrothermal sediments.

Authors:  Fumio Inagaki; Ken Takai; Kenneth H Nealson; Koki Horikoshi
Journal:  Int J Syst Evol Microbiol       Date:  2004-09       Impact factor: 2.747

Review 8.  Iso- and anteiso-fatty acids in bacteria: biosynthesis, function, and taxonomic significance.

Authors:  T Kaneda
Journal:  Microbiol Rev       Date:  1991-06

9.  Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea.

Authors:  Steven J Hallam; Peter R Girguis; Christina M Preston; Paul M Richardson; Edward F DeLong
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

10.  Venting of carbon dioxide-rich fluid and hydrate formation in mid-okinawa trough backarc basin.

Authors:  H Sakai; T Gamo; E S Kim; M Tsutsumi; T Tanaka; J Ishibashi; H Wakita; M Yamano; T Oomori
Journal:  Science       Date:  1990-06-01       Impact factor: 47.728

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  27 in total

1.  Characteristics of the cultivable bacteria from sediments associated with two deep-sea hydrothermal vents in Okinawa Trough.

Authors:  Qing-lei Sun; Ming-qing Wang; Li Sun
Journal:  World J Microbiol Biotechnol       Date:  2015-09-26       Impact factor: 3.312

2.  Lakes of liquid CO2 in the deep sea.

Authors:  Kenneth Nealson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-13       Impact factor: 11.205

3.  First cultivation and ecological investigation of a bacterium affiliated with the candidate phylum OP5 from hot springs.

Authors:  Koji Mori; Michinari Sunamura; Katsunori Yanagawa; Jun-ichiro Ishibashi; Youko Miyoshi; Takao Iino; Ken-Ichiro Suzuki; Tetsuro Urabe
Journal:  Appl Environ Microbiol       Date:  2008-09-05       Impact factor: 4.792

4.  Geomicrobiology: Low life.

Authors:  Amanda Leigh Mascarelli
Journal:  Nature       Date:  2009-06-11       Impact factor: 49.962

5.  Archaeal diversity and distribution along thermal and geochemical gradients in hydrothermal sediments at the Yonaguni Knoll IV hydrothermal field in the Southern Okinawa trough.

Authors:  Takuro Nunoura; Hanako Oida; Miwako Nakaseama; Ayako Kosaka; Satoru B Ohkubo; Toru Kikuchi; Hiromi Kazama; Shoko Hosoi-Tanabe; Ko-Ichi Nakamura; Masataka Kinoshita; Hisako Hirayama; Fumio Inagaki; Urumu Tsunogai; Jun-Ichiro Ishibashi; Ken Takai
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

Review 6.  Methane oxidation by anaerobic archaea for conversion to liquid fuels.

Authors:  Thomas J Mueller; Matthew J Grisewood; Hadi Nazem-Bokaee; Saratram Gopalakrishnan; James G Ferry; Thomas K Wood; Costas D Maranas
Journal:  J Ind Microbiol Biotechnol       Date:  2014-11-27       Impact factor: 3.346

7.  Continuous enrichment cultures: insights into prokaryotic diversity and metabolic interactions in deep-sea vent chimneys.

Authors:  Anne Postec; Françoise Lesongeur; Patricia Pignet; Bernard Ollivier; Joël Querellou; Anne Godfroy
Journal:  Extremophiles       Date:  2007-06-19       Impact factor: 2.395

8.  Metabolically active microbial communities in marine sediment under high-CO(2) and low-pH extremes.

Authors:  Katsunori Yanagawa; Yuki Morono; Dirk de Beer; Matthias Haeckel; Michinari Sunamura; Taiki Futagami; Tatsuhiko Hoshino; Takeshi Terada; Ko-Ichi Nakamura; Tetsuro Urabe; Gregor Rehder; Antje Boetius; Fumio Inagaki
Journal:  ISME J       Date:  2012-10-25       Impact factor: 10.302

9.  Vertical distribution of bacterial and archaeal communities along discrete layers of a deep-sea cold sediment sample at the East Pacific Rise (approximately 13 degrees N).

Authors:  Youxun Li; Fuchao Li; Xiaowen Zhang; Song Qin; Zhigang Zeng; Hongyue Dang; Yunshan Qin
Journal:  Extremophiles       Date:  2008-04-17       Impact factor: 2.395

10.  Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep.

Authors:  Karen G Lloyd; Daniel B Albert; Jennifer F Biddle; Jeffrey P Chanton; Oscar Pizarro; Andreas Teske
Journal:  PLoS One       Date:  2010-01-15       Impact factor: 3.240

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