Literature DB >> 16957776

Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27.

Daniel Schubert1, Lucia Primavesi, Anthony Bishopp, Gethin Roberts, John Doonan, Thomas Jenuwein, Justin Goodrich.   

Abstract

The plant Polycomb-group (Pc-G) protein CURLY LEAF (CLF) is required to repress targets such as AGAMOUS (AG) and SHOOTMERISTEMLESS (STM). Using chromatin immunoprecipitation, we identify AG and STM as direct targets for CLF and show that they carry a characteristic epigenetic signature of dispersed histone H3 lysine 27 trimethylation (H3K27me3) and localised H3K27me2 methylation. H3K27 methylation is present throughout leaf development and consistent with this, CLF is required persistently to silence AG. However, CLF is not itself an epigenetic mark as it is lost during mitosis. We suggest a model in which Pc-G proteins are recruited to localised regions of targets and then mediate dispersed H3K27me3. Analysis of transgenes carrying AG regulatory sequences confirms that H3K27me3 can spread to novel sequences in a CLF-dependent manner and further shows that H3K27me3 methylation is not sufficient for silencing of targets. We suggest that the spread of H3K27me3 contributes to the mitotic heritability of Pc-G silencing, and that the loss of silencing caused by transposon insertions at plant Pc-G targets reflects impaired spreading.

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Year:  2006        PMID: 16957776      PMCID: PMC1590001          DOI: 10.1038/sj.emboj.7601311

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  57 in total

Review 1.  Split decision: what happens to nucleosomes during DNA replication?

Authors:  Anthony T Annunziato
Journal:  J Biol Chem       Date:  2005-01-21       Impact factor: 5.157

Review 2.  Gardening the genome: DNA methylation in Arabidopsis thaliana.

Authors:  Simon W-L Chan; Ian R Henderson; Steven E Jacobsen
Journal:  Nat Rev Genet       Date:  2005-05       Impact factor: 53.242

3.  Islands of co-expressed neighbouring genes in Arabidopsis thaliana suggest higher-order chromosome domains.

Authors:  Shuhua Zhan; Julie Horrocks; Lewis N Lukens
Journal:  Plant J       Date:  2006-02       Impact factor: 6.417

4.  Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis.

Authors:  Olivier Mathieu; Aline V Probst; Jerzy Paszkowski
Journal:  EMBO J       Date:  2005-07-07       Impact factor: 11.598

5.  Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.

Authors:  Kathrin Naumann; Andreas Fischer; Ingo Hofmann; Veiko Krauss; Sameer Phalke; Kristina Irmler; Gerd Hause; Anne-Cathleen Aurich; Rainer Dorn; Thomas Jenuwein; Gunter Reuter
Journal:  EMBO J       Date:  2005-03-17       Impact factor: 11.598

6.  Local coexpression domains of two to four genes in the genome of Arabidopsis.

Authors:  Xin-Ying Ren; Mark W E J Fiers; Willem J Stiekema; Jan-Peter Nap
Journal:  Plant Physiol       Date:  2005-05-27       Impact factor: 8.340

7.  Organ-specific expression of Arabidopsis genome during development.

Authors:  Ligeng Ma; Ning Sun; Xigang Liu; Yuling Jiao; Hongyu Zhao; Xing Wang Deng
Journal:  Plant Physiol       Date:  2005-05       Impact factor: 8.340

8.  The downregulation of FLOWERING LOCUS C (FLC) expression in plants with low levels of DNA methylation and by vernalization occurs by distinct mechanisms.

Authors:  E Jean Finnegan; Kathryn A Kovac; Estelle Jaligot; Candice C Sheldon; W James Peacock; Elizabeth S Dennis
Journal:  Plant J       Date:  2005-11       Impact factor: 6.417

9.  Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.

Authors:  Yujiang Shi; Fei Lan; Caitlin Matson; Peter Mulligan; Johnathan R Whetstine; Philip A Cole; Robert A Casero; Yang Shi
Journal:  Cell       Date:  2004-12-29       Impact factor: 41.582

10.  Epigenetic control of plant development by Polycomb-group proteins.

Authors:  Daniel Schubert; Oliver Clarenz; Justin Goodrich
Journal:  Curr Opin Plant Biol       Date:  2005-10       Impact factor: 7.834

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  157 in total

1.  Cross talk between the KNOX and ethylene pathways is mediated by intron-binding transcription factors in barley.

Authors:  Michela Osnato; Maria Rosaria Stile; Yamei Wang; Donaldo Meynard; Serena Curiale; Emmanuel Guiderdoni; Yongxiu Liu; David S Horner; Pieter B F Ouwerkerk; Carlo Pozzi; Kai J Müller; Francesco Salamini; Laura Rossini
Journal:  Plant Physiol       Date:  2010-10-04       Impact factor: 8.340

2.  An E3 ligase complex regulates SET-domain polycomb group protein activity in Arabidopsis thaliana.

Authors:  Cheol Woong Jeong; Hyungmin Roh; Tuong Vi Dang; Yang Do Choi; Robert L Fischer; Jong Seob Lee; Yeonhee Choi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

Review 3.  Polycomb group complexes mediate developmental transitions in plants.

Authors:  Sarah Holec; Frédéric Berger
Journal:  Plant Physiol       Date:  2011-11-15       Impact factor: 8.340

Review 4.  Regulation of transcription in plants: mechanisms controlling developmental switches.

Authors:  Kerstin Kaufmann; Alice Pajoro; Gerco C Angenent
Journal:  Nat Rev Genet       Date:  2010-11-10       Impact factor: 53.242

5.  Functional analysis of SlEZ1 a tomato enhancer of zeste (E(z)) gene demonstrates a role in flower development.

Authors:  A How Kit; L Boureau; L Stammitti-Bert; D Rolin; E Teyssier; P Gallusci
Journal:  Plant Mol Biol       Date:  2010-06-27       Impact factor: 4.076

6.  The CURLY LEAF interacting protein BLISTER controls expression of polycomb-group target genes and cellular differentiation of Arabidopsis thaliana.

Authors:  Nicole Schatlowski; Yvonne Stahl; Mareike L Hohenstatt; Justin Goodrich; Daniel Schubert
Journal:  Plant Cell       Date:  2010-07-20       Impact factor: 11.277

Review 7.  Plant SET domain-containing proteins: structure, function and regulation.

Authors:  Danny W-K Ng; Tao Wang; Mahesh B Chandrasekharan; Rodolfo Aramayo; Sunee Kertbundit; Timothy C Hall
Journal:  Biochim Biophys Acta       Date:  2007-04-12

8.  INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana.

Authors:  José María Barrero; Rebeca González-Bayón; Juan Carlos del Pozo; María Rosa Ponce; José Luis Micol
Journal:  Plant Cell       Date:  2007-09-14       Impact factor: 11.277

9.  The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants.

Authors:  Cristel C Carles; Jennifer C Fletcher
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

10.  A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization.

Authors:  Filomena De Lucia; Pedro Crevillen; Alexandra M E Jones; Thomas Greb; Caroline Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-14       Impact factor: 11.205

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