Literature DB >> 16957371

Complications in mammalian microRNA target prediction.

Neil R Smalheiser1, Vetle I Torvik.   

Abstract

In this chapter, we review evidence that at least three different types of microRNA (miRNA)-messenger RNA (mRNA) target interactions exist in mammals: short seeds, long seeds, and "perfect" hits (allowing G:U matches). Because new types of miRNAs are still being discovered, this list may not yet be complete.

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Year:  2006        PMID： 16957371     DOI： 10.1385/1-59745-123-1:115

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  18 in total

1.  Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA.

Authors:  Lin Zhang; Dongxia Hou; Xi Chen; Donghai Li; Lingyun Zhu; Yujing Zhang; Jing Li; Zhen Bian; Xiangying Liang; Xing Cai; Yuan Yin; Cheng Wang; Tianfu Zhang; Dihan Zhu; Dianmu Zhang; Jie Xu; Qun Chen; Yi Ba; Jing Liu; Qiang Wang; Jianqun Chen; Jin Wang; Meng Wang; Qipeng Zhang; Junfeng Zhang; Ke Zen; Chen-Yu Zhang
Journal:  Cell Res       Date:  2011-09-20       Impact factor: 25.617

2.  Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.

Authors:  Glen M Borchert; Nathaniel W Holton; Jonathan D Williams; William L Hernan; Ian P Bishop; Joel A Dembosky; James E Elste; Nathaniel S Gregoire; Jee-Ah Kim; Wesley W Koehler; Joe C Lengerich; Arianna A Medema; Marilyn A Nguyen; Geoffrey D Ower; Michelle A Rarick; Brooke N Strong; Nicholas J Tardi; Nathan M Tasker; Darren J Wozniak; Craig Gatto; Erik D Larson
Journal:  Mob Genet Elements       Date:  2011-05

3.  Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.

Authors:  Justin T Roberts; Elvera A Cooper; Connor J Favreau; Jacob S Howell; Lee G Lane; James E Mills; Derrick C Newman; Tabitha J Perry; Meaghan E Russell; Brittany M Wallace; Glen M Borchert
Journal:  Mob Genet Elements       Date:  2014-01-10

Review 4.  miRNA in wound inflammation and angiogenesis.

Authors:  Sashwati Roy; Chandan K Sen
Journal:  Microcirculation       Date:  2012-04       Impact factor: 2.628

5.  Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma.

Authors:  Huiqing Liu; Angela R Brannon; Anupama R Reddy; Gabriela Alexe; Michael W Seiler; Alexandra Arreola; Jay H Oza; Ming Yao; David Juan; Louis S Liou; Shridar Ganesan; Arnold J Levine; W K Rathmell; Gyan V Bhanot
Journal:  BMC Syst Biol       Date:  2010-04-27

Review 6.  Computational methods to identify miRNA targets.

Authors:  Molly Hammell
Journal:  Semin Cell Dev Biol       Date:  2010-01-15       Impact factor: 7.727

7.  Functional microRNAs and target sites are created by lineage-specific transposition.

Authors:  Ryan M Spengler; Clayton K Oakley; Beverly L Davidson
Journal:  Hum Mol Genet       Date:  2013-11-13       Impact factor: 6.150

8.  Differentially expressed proteins identified in overexpressed let-7a gastric carcinoma cells by two-dimensional polyacrylamide gel electrophoresis.

Authors:  Yimin Zhu; Xingyuan Xiao; Lairong Dong; Zhiming Liu
Journal:  Tumour Biol       Date:  2012-09-12

Review 9.  Micromanaging vascular biology: tiny microRNAs play big band.

Authors:  Chandan K Sen; Gayle M Gordillo; Savita Khanna; Sashwati Roy
Journal:  J Vasc Res       Date:  2009-06-30       Impact factor: 1.934

10.  Adenosine deamination in human transcripts generates novel microRNA binding sites.

Authors:  Glen M Borchert; Brian L Gilmore; Ryan M Spengler; Yi Xing; William Lanier; Debashish Bhattacharya; Beverly L Davidson
Journal:  Hum Mol Genet       Date:  2009-09-23       Impact factor: 6.150
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