Literature DB >> 16957283

The cDNA sequencing project.

Hideko Urushihara1, Takahiro Morio, Yoshimasa Tanaka.   

Abstract

The Dictyostelium discoideum cDNA sequencing project started in 1995, preceding the genome sequencing project. Altogether, 14 cDNA libraries, including full-length ones, were constructed from five different stages of growth and asexual and sexual development, from which nearly 100,000 randomly chosen clones were sequenced to yield over 150,000 expressed sequence tags (ESTs). The data have been publicized online to facilitate clone distribution and collaboration using the whole clone set for microarray analyses. The EST reads were assembled to 6700 independent genes, which constitute about 55% of the total estimated Dictyostelium genes. Utilization of wet and dry resources have contributed to the understanding of the genetic system controlling the multicellular development in Dictyostelium.

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Year:  2006        PMID: 16957283     DOI: 10.1385/1-59745-144-4:31

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

Review 1.  Dictyostelium finds new roles to model.

Authors:  Jeffrey G Williams
Journal:  Genetics       Date:  2010-07       Impact factor: 4.562

2.  Regulation of ammonia homeostasis by the ammonium transporter AmtA in Dictyostelium discoideum.

Authors:  Ryuji Yoshino; Takahiro Morio; Yoko Yamada; Hidekazu Kuwayama; Masazumi Sameshima; Yoshimasa Tanaka; Hiromi Sesaki; Miho Iijima
Journal:  Eukaryot Cell       Date:  2007-10-19

3.  The silkworm Z chromosome is enriched in testis-specific genes.

Authors:  K P Arunkumar; Kazuei Mita; J Nagaraju
Journal:  Genetics       Date:  2009-03-30       Impact factor: 4.562

4.  Conservation and divergence between cytoplasmic and muscle-specific actin capping proteins: insights from the crystal structure of cytoplasmic Cap32/34 from Dictyostelium discoideum.

Authors:  Christian Eckert; Agnieszka Goretzki; Maria Faberova; Martin Kollmar
Journal:  BMC Struct Biol       Date:  2012-06-01

5.  dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa.

Authors:  Pascale Gaudet; Petra Fey; Siddhartha Basu; Yulia A Bushmanova; Robert Dodson; Kerry A Sheppard; Eric M Just; Warren A Kibbe; Rex L Chisholm
Journal:  Nucleic Acids Res       Date:  2010-11-17       Impact factor: 16.971

6.  DictyBase 2013: integrating multiple Dictyostelid species.

Authors:  Siddhartha Basu; Petra Fey; Yogesh Pandit; Robert Dodson; Warren A Kibbe; Rex L Chisholm
Journal:  Nucleic Acids Res       Date:  2012-11-20       Impact factor: 16.971

7.  Subcellular localization of ammonium transporters in Dictyostelium discoideum.

Authors:  Janet H Kirsten; Yanhua Xiong; Carter T Davis; Charles K Singleton
Journal:  BMC Cell Biol       Date:  2008-12-24       Impact factor: 4.241

8.  dictyBase--a Dictyostelium bioinformatics resource update.

Authors:  Petra Fey; Pascale Gaudet; Tomaz Curk; Blaz Zupan; Eric M Just; Siddhartha Basu; Sohel N Merchant; Yulia A Bushmanova; Gad Shaulsky; Warren A Kibbe; Rex L Chisholm
Journal:  Nucleic Acids Res       Date:  2008-10-30       Impact factor: 16.971

  8 in total

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