Literature DB >> 16957270

Cloning of the novel gene encoding beta-agarase C from a marine bacterium, Vibrio sp. strain PO-303, and characterization of the gene product.

Jinhua Dong1, Shinnosuke Hashikawa, Takafumi Konishi, Yutaka Tamaru, Toshiyoshi Araki.   

Abstract

The beta-agarase C gene (agaC) of a marine bacterium, Vibrio sp. strain PO-303, consisted of 1,437 bp encoding 478 amino acid residues. beta-Agarase C was identified as the first beta-agarase that cannot hydrolyze neoagarooctaose and smaller neoagarooligosaccharides and was assigned to a novel glycoside hydrolase family.

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Year:  2006        PMID： 16957270      PMCID： PMC1563652          DOI： 10.1128/AEM.00935-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  20 in total

1.  Enzymatic properties and nucleotide and amino acid sequences of a thermostable beta-agarase from a novel species of deep-sea Microbulbifer.

Authors:  Y Ohta; Y Hatada; Y Nogi; M Miyazaki; Z Li; M Akita; Y Hidaka; S Goda; S Ito; K Horikoshi
Journal:  Appl Microbiol Biotechnol       Date:  2004-02-20       Impact factor: 4.813

2.  Notes on sugar determination.

Authors:  M SMOGYI
Journal:  J Biol Chem       Date:  1952-03       Impact factor: 5.157

Review 3.  Regulatory sequences involved in the promotion and termination of RNA transcription.

Authors:  M Rosenberg; D Court
Journal:  Annu Rev Genet       Date:  1979       Impact factor: 16.830

4.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

5.  Cloning, expression, and characterization of a glycoside hydrolase family 86 beta-agarase from a deep-sea Microbulbifer-like isolate.

Authors:  Yukari Ohta; Yuji Hatada; Yuichi Nogi; Zhijun Li; Susumu Ito; Koki Horikoshi
Journal:  Appl Microbiol Biotechnol       Date:  2004-12       Impact factor: 4.813

6.  Purification and characterization of a novel beta-agarase from an alkalophilic bacterium, Alteromonas sp. E-1.

Authors:  K Kirimura; N Masuda; Y Iwasaki; H Nakagawa; R Kobayashi; S Usami
Journal:  J Biosci Bioeng       Date:  1999       Impact factor: 2.894

7.  Sequence analysis of the agaB gene encoding a new beta-agarase from Vibrio sp. strain JT0107.

Authors:  Y Sugano; T Matsumoto; M Noma
Journal:  Biochim Biophys Acta       Date:  1994-05-17

8.  Purification and characterization of agarases from a marine bacterium, Vibrio sp. PO-303.

Authors: 
Journal:  J Mar Biotechnol       Date:  1998-12

9.  High-level expression of a neoagarobiose-producing beta-agarase gene from Agarivorans sp. JAMB-A11 in Bacillus subtilis and enzymic properties of the recombinant enzyme.

Authors:  Yukari Ohta; Yuji Hatada; Susumu Ito; Koki Horikoshi
Journal:  Biotechnol Appl Biochem       Date:  2005-04       Impact factor: 2.431

10.  Investigation of the role of a beta(1-4) agarase produced by Pseudoalteromonas gracilis B9 in eliciting disease symptoms in the red alga Gracilaria gracilis.

Authors:  Declan C Schroeder; Mohamed A Jaffer; Vernon E Coyne
Journal:  Microbiology       Date:  2003-10       Impact factor: 2.777
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  9 in total

1.  Expression, crystallization and preliminary X-ray analysis of an anomeric inverting agarase from Pseudoalteromonas sp. CY24.

Authors:  Aiming Ren; Zong-Xiang Xia; Wengong Yu; Jiahai Zhou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-11-26

2.  Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans.

Authors:  Jan-Hendrik Hehemann; Gaëlle Correc; François Thomas; Thomas Bernard; Tristan Barbeyron; Murielle Jam; William Helbert; Gurvan Michel; Mirjam Czjzek
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

3.  Cloning, characterization, and molecular application of a beta-agarase gene from Vibrio sp. strain V134.

Authors:  Wei-wei Zhang; Li Sun
Journal:  Appl Environ Microbiol       Date:  2007-03-02       Impact factor: 4.792

Review 4.  Agarase: review of major sources, categories, purification method, enzyme characteristics and applications.

Authors:  Xiao Ting Fu; Sang Moo Kim
Journal:  Mar Drugs       Date:  2010-01-26       Impact factor: 5.118

5.  An extra peptide within the catalytic module of a β-agarase affects the agarose degradation pattern.

Authors:  Wen-Jun Han; Jing-Yan Gu; Hui-Hui Liu; Fu-Chuan Li; Zhi-Hong Wu; Yue-Zhong Li
Journal:  J Biol Chem       Date:  2013-02-01       Impact factor: 5.157

6.  Overexpression and characterization of a novel thermostable β-agarase YM01-3, from marine bacterium Catenovulum agarivorans YM01(T).

Authors:  Fangyuan Cui; Sujie Dong; Xiaochong Shi; Xia Zhao; Xiao-Hua Zhang
Journal:  Mar Drugs       Date:  2014-05-12       Impact factor: 5.118

7.  Extracellular production of a novel endo-β-agarase AgaA from Pseudomonas vesicularis MA103 that cleaves agarose into neoagarotetraose and neoagarohexaose.

Authors:  Pang-Hung Hsu; Chien-Han Wei; Wen-Jung Lu; Fen Shen; Chorng-Liang Pan; Hong-Ting Victor Lin
Journal:  Int J Mol Sci       Date:  2015-03-11       Impact factor: 5.923

8.  Horizontal Transfer of a Novel Soil Agarase Gene from Marine Bacteria to Soil Bacteria via Human Microbiota.

Authors:  Tao Song; Hui Xu; Congchong Wei; Tengfei Jiang; Shishang Qin; Weijia Zhang; Yu Cao; Chao Hu; Fan Zhang; Dairong Qiao; Yi Cao
Journal:  Sci Rep       Date:  2016-10-19       Impact factor: 4.379

9.  Isolation and Characterization of a Glycosyl Hydrolase Family 16 β-Agarase from a Mangrove Soil Metagenomic Library.

Authors:  Zhimao Mai; Hongfei Su; Si Zhang
Journal:  Int J Mol Sci       Date:  2016-08-19       Impact factor: 5.923
  9 in total

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