Literature DB >> 16956246

Structure of the boronic acid dimer and the relative stabilities of its conformers.

Joseph D Larkin1, Krishna L Bhat, George D Markham, Bernard R Brooks, Henry F Schaefer, Charles W Bock.   

Abstract

Despite the widespread use of boronic acids in materials science and as pharmaceutical agents, many aspects of their structure and reactivity are not well understood. In this research the boronic acid dimer, [HB(OH)(2)](2), was studied by second-order Møller-Plesset (MP2) perturbation theory and coupled cluster methodology with single and double excitations (CCSD). Pople split-valence 6-31+G*, 6-311G**, and 6-311++G** and Dunning-Woon correlation-consistent cc-pVDZ, aug-cc-pVDZ, cc-pVTZ, and aug-cc-pVTZ basis sets were employed for the calculations. A doubly hydrogen-bonded conformer (1) of the dimer was consistently found to be lowest in energy; the structure of 1 was planar (C(2h)) at most computational levels employed but was significantly nonplanar (C(2)) at the MP2/6-311++G** and CCSD/6-311++G** levels, the result of an intrinsic problem with Pople-type sp-diffuse basis functions on heavy atoms. The dimerization energy, enthalpy, and free energy for the formation of (1) from the exo-endo conformer of the monomer were -10.8, -9.2, and +1.2 kcal/mol, respectively, at the MP2/aug-cc-pVTZ level. Several other hydrogen-bonded conformers of the dimer were local minima on the potential energy surface (PES) and ranged from 2 to 5 kcal/mol higher in energy than 1. Nine doubly OH-bridged conformers, in which the boron atoms were tetracoordinated, were also local minima on the PES, but they were all greater than 13 kcal/mol higher in energy than 1; doubly H-bridged structures proved to be transition states. MP2 and CCSD results were compared to those from the BLYP, B3LYP, OLYP, O3LYP, PBE1PBE, and TPSS functionals with the 6-311++G** and aug-cc-pVTZ basis sets; the PBE1PBE functional performed best relative to the MP2 and CCSD results. Self-consistent reaction field (SCRF) calculations predict that boronic acid dimerization is less favorable in solution than in vacuo.

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Year:  2006        PMID: 16956246     DOI: 10.1021/jp062407h

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  Heats of Formation for the Boronic Acids R-B(OH)2 and Boroxines R3B3O3 (R=H, Li, HBe, H2B, H3C, H2N, HO, F, and Cl) Calculated at the G2, G3, and G4 Levels of Theory.

Authors:  Charles W Bock; Joseph D Larkin
Journal:  Comput Theor Chem       Date:  2012-04-15       Impact factor: 1.926

2.  Thermodynamics of boroxine formation from the aliphatic boronic acid monomers R-B(OH)2 (R = H, H3C, H2N, HO, and F): a computational investigation.

Authors:  Krishna L Bhat; George D Markham; Joseph D Larkin; Charles W Bock
Journal:  J Phys Chem A       Date:  2011-06-08       Impact factor: 2.781

3.  A Comparison of the Structure and Bonding in the Aliphatic Boronic R-B(OH)2 and Borinic R-BH(OH) acids (R=H; NH2, OH, and F): A Computational Investigation.

Authors:  Niny Z Rao; Joseph D Larkin; Charles W Bock
Journal:  Struct Chem       Date:  2015-12-30       Impact factor: 1.887

4.  Monosubstituted Phenylboronic Acids, R-B(OH)2 (R = C6H5, C6H4CH3, C6H4NH2, C6H4OH, and C6H4F): A Computational Investigation.

Authors:  Niny Z Rao; Joseph D Larkin; Charles W Bock
Journal:  Struct Chem       Date:  2016-12-15       Impact factor: 1.887

5.  Computational investigation of the oxidative deboronation of boroglycine, H2N-CH2-B(OH)2, Using H2O and H2O2.

Authors:  Joseph D Larkin; George D Markham; Matt Milkevitch; Bernard R Brooks; Charles W Bock
Journal:  J Phys Chem A       Date:  2009-10-15       Impact factor: 2.781

6.  A second polymorph of bis-(triphenyl-λ(5)-phosphanyl-idene)ammonium chloride-boric acid adduct.

Authors:  Bruno A Correia Bicho; Christoph Bolli; Carsten Jenne; Helene Seeger
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-17

7.  Structures and Reactivities of Cocrystals Involving Diboronic Acids and Bipyridines: In Situ Linker Reaction and 1D-to-2D Dimensionality Change via Crystal-to-Crystal Photodimerization.

Authors:  María Guadalupe Vasquez-Ríos; Gonzalo Campillo-Alvarado; Dale C Swenson; Herbert Höpfl; Leonard R MacGillivray
Journal:  Chemistry       Date:  2022-03-25       Impact factor: 5.020

  7 in total

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