Literature DB >> 16954143

DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold.

Mensur Dlakić1.   

Abstract

Two RNases, Dicer and Argonaute, are at the heart of the RNA interference (RNAi) molecular machinery responsible for gene silencing. Both RNases contain multiple domains, most of which have been characterized or have functions that can be predicted based on sequence comparisons. However, Dicers of higher eukaryotes contain the domain known as DUF283 which at present has no assigned role. Using sensitive profile-profile comparisons, we detected a divergent double-stranded RNA-binding domain coinciding with the DUF283 of Dicer. This finding has potential implications regarding the mechanistic role of Dicer in RNAi.

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Year:  2006        PMID: 16954143     DOI: 10.1093/bioinformatics/btl468

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  27 in total

1.  Suppression of RNA interference pathway in vitro by Grass carp reovirus.

Authors:  Shuai Guo; Dan Xu; Hong-xu Xu; Tu Wang; Jia-le Li; Li-qun Lu
Journal:  Virol Sin       Date:  2012-04-11       Impact factor: 4.327

Review 2.  Dicer-like (DCL) proteins in plants.

Authors:  Qingpo Liu; Ying Feng; Zhujun Zhu
Journal:  Funct Integr Genomics       Date:  2009-02-17       Impact factor: 3.410

Review 3.  'Black sheep' that don't leave the double-stranded RNA-binding domain fold.

Authors:  Michael L Gleghorn; Lynne E Maquat
Journal:  Trends Biochem Sci       Date:  2014-06-19       Impact factor: 13.807

Review 4.  Long Noncoding RNA in Cancer: Wiring Signaling Circuitry.

Authors:  Chunru Lin; Liuqing Yang
Journal:  Trends Cell Biol       Date:  2017-12-20       Impact factor: 20.808

Review 5.  Dicer's role as an antiviral: still an enigma.

Authors:  Christopher R MacKay; Jennifer P Wang; Evelyn A Kurt-Jones
Journal:  Curr Opin Immunol       Date:  2013-11-22       Impact factor: 7.486

6.  Conifers have a unique small RNA silencing signature.

Authors:  Elena V Dolgosheina; Ryan D Morin; Gozde Aksay; S Cenk Sahinalp; Vincent Magrini; Elaine R Mardis; Jim Mattsson; Peter J Unrau
Journal:  RNA       Date:  2008-06-19       Impact factor: 4.942

7.  Structure of the human Dicer-TRBP complex by electron microscopy.

Authors:  Pick-Wei Lau; Clinton S Potter; Bridget Carragher; Ian J MacRae
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

8.  DUFs: families in search of function.

Authors:  Alex Bateman; Penny Coggill; Robert D Finn
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-05

9.  DOLORS: versatile strategy for internal labeling and domain localization in electron microscopy.

Authors:  Pick-Wei Lau; Clinton S Potter; Bridget Carragher; Ian J MacRae
Journal:  Structure       Date:  2012-12-05       Impact factor: 5.006

10.  d-Omix: a mixer of generic protein domain analysis tools.

Authors:  Duangdao Wichadakul; Somrak Numnark; Supawadee Ingsriswang
Journal:  Nucleic Acids Res       Date:  2009-05-21       Impact factor: 16.971

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