Literature DB >> 16953630

Femtosecond time- and wavelength-resolved fluorescence and absorption spectroscopic study of the excited states of adenosine and an adenine oligomer.

Wai-Ming Kwok1, Chensheng Ma, David Lee Phillips.   

Abstract

By employing broadband femtosecond Kerr-gated time-resolved fluorescence (KTRF) and transient absorption (TA) techniques, we report the first (to our knowledge) femtosecond combined time- and wavelength-resolved study on an ultraviolet-excited nucleoside and a single-stranded oligonucleotide (namely adenosine (Ado) and single-stranded adenine oligomer (dA)(20)) in aqueous solution. With the advantages of the ultrafast time resolution, the broad spectral and temporal probe window, and a high sensitivity, our KTRF and TA results enable the real time monitoring and spectral characterization of the excited-state relaxation processes of the Ado nucleoside and (dA)(20) oligonucleotide investigated. The temporal evolution of the 267 nm excited Ado KTRF spectra indicates there are two emitting components with lifetimes of approximately 0.13 ps and approximately 0.45 ps associated with the L(a) and L(b) pipi* excited states, respectively. These Ado results reveal no obvious evidence for the involvement of the npi* state along the irradiative internal conversion pathway. A distinct mechanism involving only the two pipi* states has been proposed for the ultrafast Ado deactivation dynamics in aqueous solution. The time dependence of the 267 nm excited (dA)(20) KTRF and TA spectra reveals temporal evolution from an ultrafast "A-like" state (with a approximately 0.39 ps decay time) to a relatively long-lived E(1) "excimer" (approximately 4.3 ps decay time) and an E(2) "excimer-like" (approximately 182 ps decay time) state. The "A-like" state has a spectral character closely resembling the excited state of Ado. Comparison of the spectral evolution between the results for Ado and (dA)(20) provides unequivocal evidence for the local excitation character of the initially photoexcited (dA)(20). The rapid transformation of the locally excited (dA)(20) component into the delocalized E(1) "excimer" state which then further evolves into the E(2) "excimer-like" state indicates that base stacking has a high ability to modify the excited-state deactivation pathway. This modification appears to occur by suppressing the internal conversion pathway of an individually excited base component where the stacking interaction mediates efficient interbase energy transfer and promotes formation of the collective excited states. This feature of the local excitation that is subsequently followed by rapid energy delocalization into nearby bases may occur in many base multimer systems. Our results provide an important new contribution to better understanding DNA photophysics.

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Year:  2006        PMID: 16953630     DOI: 10.1021/ja0622002

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Influence of base stacking on excited-state behavior of polyadenine in water, based on time-dependent density functional calculations.

Authors:  F Santoro; V Barone; R Improta
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-01       Impact factor: 11.205

2.  Polyfluorophores on a DNA backbone: a multicolor set of labels excited at one wavelength.

Authors:  Yin Nah Teo; James N Wilson; Eric T Kool
Journal:  J Am Chem Soc       Date:  2009-03-25       Impact factor: 15.419

3.  Ultrafast excited-state dynamics of RNA and DNA C tracts.

Authors:  Boiko Cohen; Matthew H Larson; Bern Kohler
Journal:  Chem Phys       Date:  2008-06       Impact factor: 2.348

4.  UV excitation of single DNA and RNA strands produces high yields of exciplex states between two stacked bases.

Authors:  Tomohisa Takaya; Charlene Su; Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-22       Impact factor: 11.205

5.  Capturing the radical ion-pair intermediate in DNA guanine oxidation.

Authors:  Jialong Jie; Kunhui Liu; Lidan Wu; Hongmei Zhao; Di Song; Hongmei Su
Journal:  Sci Adv       Date:  2017-06-02       Impact factor: 14.136

6.  How Does Thymine DNA Survive Ultrafast Dimerization Damage?

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Journal:  Molecules       Date:  2016-12-31       Impact factor: 4.411

7.  Electronic Excitations in Complex Molecular Environments: Many-Body Green's Functions Theory in VOTCA-XTP.

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Journal:  J Chem Theory Comput       Date:  2018-11-21       Impact factor: 6.006

8.  Electronic and structural elements that regulate the excited-state dynamics in purine nucleobase derivatives.

Authors:  Carlos E Crespo-Hernández; Lara Martínez-Fernández; Clemens Rauer; Christian Reichardt; Sebastian Mai; Marvin Pollum; Philipp Marquetand; Leticia González; Inés Corral
Journal:  J Am Chem Soc       Date:  2015-03-25       Impact factor: 15.419

9.  Multiple Decay Mechanisms and 2D-UV Spectroscopic Fingerprints of Singlet Excited Solvated Adenine-Uracil Monophosphate.

Authors:  Quansong Li; Angelo Giussani; Javier Segarra-Martí; Artur Nenov; Ivan Rivalta; Alexander A Voityuk; Shaul Mukamel; Daniel Roca-Sanjuán; Marco Garavelli; Lluís Blancafort
Journal:  Chemistry       Date:  2016-04-26       Impact factor: 5.236

10.  Electronic delocalization, charge transfer and hypochromism in the UV absorption spectrum of polyadenine unravelled by multiscale computations and quantitative wavefunction analysis.

Authors:  Juan J Nogueira; Felix Plasser; Leticia González
Journal:  Chem Sci       Date:  2017-06-13       Impact factor: 9.825

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