Literature DB >> 16953220

The p53 knowledgebase: an integrated information resource for p53 research.

Y P Lim1, T T Lim, Y L Chan, A C M Song, B H Yeo, B Vojtesek, D Coomber, G Rajagopal, D Lane.   

Abstract

The p53 tumor suppressor protein plays a central role in maintaining genomic integrity by occupying a nodal point in the DNA damage control pathway. Here it integrates a wide variety of signals, responding in one of several ways, that is, cell cycle arrest, senescence or programmed cell death (apoptosis). Mutations in the tumor suppressor gene tp53, which affects the key transcriptional regulatory processes in cell growth and death, occur frequently in cancer and helps explain why p53 has been called the guardian of the genome. There is a vast body of published knowledge on all aspects of p53's role in cancer. To facilitate research, it would be helpful if this information could be collected, curated and updated in a format that is easily accessible to the user community. To this end, we initiated the p53 knowledgebase project (http://p53.bii.a-star.edu.sg). The p53 knowledgebase is a user-friendly web portal incorporating visualization and analysis tools that integrates information from the published literature with other manually curated information to facilitate knowledge discovery. This includes curated information on sequence, structural, mutation, polymorphisms, protein-protein interactions, transcription factors, transcriptional targets, antibodies and post-translational modifications that involve p53. The goal is to collect and maintain all relevant data on p53 and present it in an easily accessible format that will be useful to researchers in the field.

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Year:  2006        PMID: 16953220     DOI: 10.1038/sj.onc.1209952

Source DB:  PubMed          Journal:  Oncogene        ISSN: 0950-9232            Impact factor:   9.867


  18 in total

1.  Lack of p53 decreases basal oxidative stress levels in the brain through upregulation of thioredoxin-1, biliverdin reductase-A, manganese superoxide dismutase, and nuclear factor kappa-B.

Authors:  Eugenio Barone; Giovanna Cenini; Rukhsana Sultana; Fabio Di Domenico; Ada Fiorini; Marzia Perluigi; Teresa Noel; Chi Wang; Cesare Mancuso; Daret K St Clair; D Allan Butterfield
Journal:  Antioxid Redox Signal       Date:  2012-02-21       Impact factor: 8.401

2.  Regulation of autophagy by cytoplasmic p53.

Authors:  Ezgi Tasdemir; M Chiara Maiuri; Lorenzo Galluzzi; Ilio Vitale; Mojgan Djavaheri-Mergny; Marcello D'Amelio; Alfredo Criollo; Eugenia Morselli; Changlian Zhu; Francis Harper; Ulf Nannmark; Chrysanthi Samara; Paolo Pinton; José Miguel Vicencio; Rosa Carnuccio; Ute M Moll; Frank Madeo; Patrizia Paterlini-Brechot; Rosario Rizzuto; Gyorgy Szabadkai; Gérard Pierron; Klas Blomgren; Nektarios Tavernarakis; Patrice Codogno; Francesco Cecconi; Guido Kroemer
Journal:  Nat Cell Biol       Date:  2008-05-04       Impact factor: 28.824

Review 3.  ROS and p53: a versatile partnership.

Authors:  Bin Liu; Yumin Chen; Daret K St Clair
Journal:  Free Radic Biol Med       Date:  2008-01-26       Impact factor: 7.376

4.  AGR2 oncoprotein inhibits p38 MAPK and p53 activation through a DUSP10-mediated regulatory pathway.

Authors:  Roman Hrstka; Pavla Bouchalova; Eva Michalova; Eva Matoulkova; Petr Muller; Philip J Coates; Borivoj Vojtesek
Journal:  Mol Oncol       Date:  2015-12-17       Impact factor: 6.603

5.  Conserved regulation of p53 network dosage by microRNA-125b occurs through evolving miRNA-target gene pairs.

Authors:  Minh T N Le; Ng Shyh-Chang; Swea Ling Khaw; Lingzi Chin; Cathleen Teh; Junliang Tay; Elizabeth O'Day; Vladimir Korzh; Henry Yang; Ashish Lal; Judy Lieberman; Harvey F Lodish; Bing Lim
Journal:  PLoS Genet       Date:  2011-09-15       Impact factor: 5.917

6.  Sequence analysis of p53 response-elements suggests multiple binding modes of the p53 tetramer to DNA targets.

Authors:  Buyong Ma; Yongping Pan; Jie Zheng; Arnold J Levine; Ruth Nussinov
Journal:  Nucleic Acids Res       Date:  2007-04-16       Impact factor: 16.971

7.  Effects of CpG methylation on recognition of DNA by the tumour suppressor p53.

Authors:  Miriana Petrovich; Dmitry B Veprintsev
Journal:  J Mol Biol       Date:  2008-12-06       Impact factor: 5.469

8.  Lack of p53 affects the expression of several brain mitochondrial proteins: insights from proteomics into important pathways regulated by p53.

Authors:  Ada Fiorini; Rukhsana Sultana; Eugenio Barone; Giovanna Cenini; Marzia Perluigi; Cesare Mancuso; Jian Cai; Jon B Klein; Daret St Clair; D Allan Butterfield
Journal:  PLoS One       Date:  2012-11-27       Impact factor: 3.240

Review 9.  Targeting p53 by small molecules in hematological malignancies.

Authors:  Manujendra N Saha; Lugui Qiu; Hong Chang
Journal:  J Hematol Oncol       Date:  2013-03-27       Impact factor: 17.388

10.  Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA.

Authors:  Dmitry B Veprintsev; Alan R Fersht
Journal:  Nucleic Acids Res       Date:  2008-01-30       Impact factor: 16.971

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