Literature DB >> 16950120

Quantitative modeling in cell biology: what is it good for?

Alex Mogilner1, Roy Wollman, Wallace F Marshall.   

Abstract

Recently, there has been a surge in the number of pioneering studies combining experiments with quantitative modeling to explain both relatively simple modules of molecular machinery of the cell and to achieve system-level understanding of cellular networks. Here we discuss the utility and methods of modeling and review several current models of cell signaling, cytoskeletal self-organization, nuclear transport, and the cell cycle. We discuss successes of and barriers to modeling in cell biology and its future directions, and we argue, using the field of bacterial chemotaxis as an example, that the closer the complete systematic understanding of cell behavior is, the more important modeling becomes and the more experiment and theory merge.

Mesh:

Year:  2006        PMID: 16950120     DOI: 10.1016/j.devcel.2006.08.004

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  44 in total

1.  An introduction to dynamical systems.

Authors:  Eric A Sobie
Journal:  Sci Signal       Date:  2011-09-13       Impact factor: 8.192

Review 2.  Use of virtual cell in studies of cellular dynamics.

Authors:  Boris M Slepchenko; Leslie M Loew
Journal:  Int Rev Cell Mol Biol       Date:  2010       Impact factor: 6.813

3.  Cytoskeletal dynamics in fission yeast: a review of models for polarization and division.

Authors:  Tyler Drake; Dimitrios Vavylonis
Journal:  HFSP J       Date:  2010-04-15

Review 4.  Intron delays and transcriptional timing during development.

Authors:  Ian A Swinburne; Pamela A Silver
Journal:  Dev Cell       Date:  2008-03       Impact factor: 12.270

5.  NMR line shapes and multi-state binding equilibria.

Authors:  Evgenii L Kovrigin
Journal:  J Biomol NMR       Date:  2012-05-20       Impact factor: 2.835

Review 6.  Modeling stochastic kinetics of molecular machines at multiple levels: from molecules to modules.

Authors:  Debashish Chowdhury
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

Review 7.  Actin, a central player in cell shape and movement.

Authors:  Thomas D Pollard; John A Cooper
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

8.  Stochastic model of integrin-mediated signaling and adhesion dynamics at the leading edges of migrating cells.

Authors:  Murat Cirit; Matej Krajcovic; Colin K Choi; Erik S Welf; Alan F Horwitz; Jason M Haugh
Journal:  PLoS Comput Biol       Date:  2010-02-26       Impact factor: 4.475

9.  Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation.

Authors:  Andreea Munteanu; Marco Constante; Mark Isalan; Ricard V Solé
Journal:  BMC Syst Biol       Date:  2010-05-17

10.  The edges of understanding.

Authors:  Arthur D Lander
Journal:  BMC Biol       Date:  2010-04-12       Impact factor: 7.431

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