Literature DB >> 16949813

Recent advances and applications of site-directed spin labeling.

Gail E Fanucci1, David S Cafiso.   

Abstract

Site-directed spin labeling has become a popular biophysical tool for the characterization of protein structure, dynamics and conformational change. This method is well suited and widely used to study small soluble proteins, membrane proteins and large protein complexes. Recent advances in site-directed spin labeling methodology have occurred in two areas. The first involves an understanding of the conformations and local dynamics of the spin-labeled sidechain, including the features of proteins that influence electron paramagnetic resonance lineshape. The second advance is the application of pulse techniques to determine long-range distances and distance distributions in proteins. During the past two years, these technical developments have been used to address several important problems concerning the molecular function of proteins.

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Year:  2006        PMID: 16949813     DOI: 10.1016/j.sbi.2006.08.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  121 in total

1.  A nucleotide-independent nitroxide probe reports on site-specific stereomeric environment in DNA.

Authors:  Anna M Popova; Peter Z Qin
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Simulating the dynamics and orientations of spin-labeled side chains in a protein-DNA complex.

Authors:  Jessica L Sarver; Jacqueline E Townsend; Gayathri Rajapakse; Linda Jen-Jacobson; Sunil Saxena
Journal:  J Phys Chem B       Date:  2012-03-20       Impact factor: 2.991

3.  Solid-support electron paramagnetic resonance (EPR) studies of Aβ40 monomers reveal a structured state with three ordered segments.

Authors:  Lei Gu; Sam Ngo; Zhefeng Guo
Journal:  J Biol Chem       Date:  2012-01-25       Impact factor: 5.157

4.  High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins.

Authors:  John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

5.  Conformational distributions at the N-peptide/boxB RNA interface studied using site-directed spin labeling.

Authors:  Xiaojun Zhang; Sang Won Lee; Liang Zhao; Tianbing Xia; Peter Z Qin
Journal:  RNA       Date:  2010-10-27       Impact factor: 4.942

6.  Spin labeling and Double Electron-Electron Resonance (DEER) to Deconstruct Conformational Ensembles of HIV Protease.

Authors:  Thomas M Casey; Gail E Fanucci
Journal:  Methods Enzymol       Date:  2015-09-01       Impact factor: 1.600

7.  Pulsed EPR characterization of HIV-1 protease conformational sampling and inhibitor-induced population shifts.

Authors:  Zhanglong Liu; Thomas M Casey; Mandy E Blackburn; Xi Huang; Linh Pham; Ian Mitchelle S de Vera; Jeffrey D Carter; Jamie L Kear-Scott; Angelo M Veloro; Luis Galiano; Gail E Fanucci
Journal:  Phys Chem Chem Phys       Date:  2016-02-17       Impact factor: 3.676

8.  Characterization of the Domain Orientations of E. coli 5'-Nucleotidase by Fitting an Ensemble of Conformers to DEER Distance Distributions.

Authors:  Ulrike Krug; Nathan S Alexander; Richard A Stein; Antje Keim; Hassane S Mchaourab; Norbert Sträter; Jens Meiler
Journal:  Structure       Date:  2015-12-24       Impact factor: 5.006

9.  Effects of Spin-Labels on Membrane Burial Depth of MARCKS-ED Residues.

Authors:  Yifei Qi; Jeffery B Klauda; Wonpil Im
Journal:  Biophys J       Date:  2016-09-28       Impact factor: 4.033

10.  Conformation and membrane position of the region linking the two C2 domains in synaptotagmin 1 by site-directed spin labeling.

Authors:  Hao Huang; David S Cafiso
Journal:  Biochemistry       Date:  2008-11-25       Impact factor: 3.162

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