Literature DB >> 16943444

Identification of an alcohol binding site in the first cysteine-rich domain of protein kinase Cdelta.

Joydip Das1, Xiaojuan Zhou, Keith W Miller.   

Abstract

Protein kinase C (PKC) is an important signal transduction protein whose cysteine-rich regulatory domain C1 has been proposed to interact with general anesthetics in both of its diacylglycerol/phorbol ester-binding subdomains, the tandem repeats C1A and C1B. Previously, we identified an allosteric binding site on one of the two cysteine-rich domains, PKCdelta C1B. To test the hypothesis that there is an additional anesthetic site on the other cysteine-rich subdomain, C1A, we subcloned, expressed in Escherichia coli, purified, and characterized mouse PKCdelta C1A. Octanol and butanol both quenched the intrinsic fluorescence of PKCdelta C1A in a saturable manner, suggesting the presence of a binding site. To locate this site, PKCdelta C1A was photolabeled with three diazirine-containing alkanols, 3-azioctanol, 7-azioctanol, and 3-azibutanol. Mass spectrometry revealed that at low concentrations all three photoincorporated into PKCdelta C1A with a stoichiometry of 1:1 in the labeled fraction, but higher stoichiometries occurred at higher concentrations, particularly with azibutanol. Photocomplexes of PKCdelta C1A with azioctanols were separated from the unlabeled protein by HPLC, reduced, alkylated, digested with trypsin, and sequenced by mass spectrometry. All the azioctanols photolabeled PKCdelta C1A at residue Tyr-29, corresponding to Tyr-187 of the full-length PKCdelta, and at a neighboring residue, Lys-40, suggesting there is an alcohol site in this vicinity. In addition, Glu-2 was photolabeled more efficiently by 3-azibutanol than by the azioctanols, suggesting the existence of a second, smaller site.

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Year:  2006        PMID: 16943444      PMCID: PMC2242605          DOI: 10.1110/ps.062237606

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  32 in total

Review 1.  Anaesthetic actions on other targets: protein kinase C and guanine nucleotide-binding proteins.

Authors:  M J Rebecchi; S N Pentyala
Journal:  Br J Anaesth       Date:  2002-07       Impact factor: 9.166

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Interaction of alcohols and anesthetics with protein kinase Calpha.

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Journal:  J Biol Chem       Date:  1997-03-07       Impact factor: 5.157

4.  A novel diacylglycerol-lactone shows marked selectivity in vitro among C1 domains of protein kinase C (PKC) isoforms alpha and delta as well as selectivity for RasGRP compared with PKCalpha.

Authors:  Yongmei Pu; Nicholas A Perry; Dazhi Yang; Nancy E Lewin; Noemi Kedei; Derek C Braun; Sung Hee Choi; Peter M Blumberg; Susan H Garfield; James C Stone; Dehui Duan; Victor E Marquez
Journal:  J Biol Chem       Date:  2005-05-27       Impact factor: 5.157

Review 5.  New photolabeling and crosslinking methods.

Authors:  J Brunner
Journal:  Annu Rev Biochem       Date:  1993       Impact factor: 23.643

6.  Intramolecular occlusion of the diacylglycerol-binding site in the C1 domain of munc13-1.

Authors:  Nan Shen; Oleg Guryev; Josep Rizo
Journal:  Biochemistry       Date:  2005-02-01       Impact factor: 3.162

7.  Geometric isomers of a photoactivable general anesthetic delineate a binding site on adenylate kinase.

Authors:  George H Addona; S Shaukat Husain; Thilo Stehle; Keith W Miller
Journal:  J Biol Chem       Date:  2002-04-25       Impact factor: 5.157

8.  Quantitative analysis of protein far UV circular dichroism spectra by neural networks.

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Journal:  Protein Eng       Date:  1992-04

9.  Inhibition of protein kinase C by alcohols and anaesthetics.

Authors:  S J Slater; K J Cox; J V Lombardi; C Ho; M B Kelly; E Rubin; C D Stubbs
Journal:  Nature       Date:  1993-07-01       Impact factor: 49.962

10.  Protein kinase Calpha contains two activator binding sites that bind phorbol esters and diacylglycerols with opposite affinities.

Authors:  S J Slater; C Ho; M B Kelly; J D Larkin; F J Taddeo; M D Yeager; C D Stubbs
Journal:  J Biol Chem       Date:  1996-03-01       Impact factor: 5.157

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  18 in total

1.  Mechanisms revealed through general anesthetic photolabeling.

Authors:  Brian P Weiser; Kellie A Woll; William P Dailey; Roderic G Eckenhoff
Journal:  Curr Anesthesiol Rep       Date:  2014-03-01

2.  1H, 13C and 15N NMR assignments of the C1A and C1B subdomains of PKC-delta.

Authors:  Brian P Ziemba; P Ziemba Brian; Jamie C Booth; C Booth Jamie; David N M Jones; Jones N M David
Journal:  Biomol NMR Assign       Date:  2010-12-04       Impact factor: 0.746

3.  Protein kinase C deficiency-induced alcohol insensitivity and underlying cellular targets in Drosophila.

Authors:  J Chen; Y Zhang; P Shen
Journal:  Neuroscience       Date:  2009-12-17       Impact factor: 3.590

4.  Fusel alcohols regulate translation initiation by inhibiting eIF2B to reduce ternary complex in a mechanism that may involve altering the integrity and dynamics of the eIF2B body.

Authors:  Eleanor J Taylor; Susan G Campbell; Christian D Griffiths; Peter J Reid; John W Slaven; Richard J Harrison; Paul F G Sims; Graham D Pavitt; Daniela Delneri; Mark P Ashe
Journal:  Mol Biol Cell       Date:  2010-05-05       Impact factor: 4.138

5.  Interaction of anesthetics with the Rho GTPase regulator Rho GDP dissociation inhibitor.

Authors:  Cojen Ho; Sivananthaperumal Shanmugasundararaj; Keith W Miller; Steve A Malinowski; Anthony C Cook; Simon J Slater
Journal:  Biochemistry       Date:  2008-08-15       Impact factor: 3.162

6.  Alcohol binding in the C1 (C1A+C1B) domain of protein kinase C epsilon.

Authors:  Satyabrata Pany; Joydip Das
Journal:  Biochim Biophys Acta       Date:  2015-07-22

7.  The role of multiple hydrogen-bonding groups in specific alcohol binding sites in proteins: insights from structural studies of LUSH.

Authors:  Anna B Thode; Schoen W Kruse; Jay C Nix; David N M Jones
Journal:  J Mol Biol       Date:  2008-01-05       Impact factor: 5.469

8.  The pre-synaptic Munc13-1 binds alcohol and modulates alcohol self-administration in Drosophila.

Authors:  Joydip Das; Shiyu Xu; Satyabrata Pany; Ashley Guillory; Vrutant Shah; Gregg W Roman
Journal:  J Neurochem       Date:  2013-06-10       Impact factor: 5.372

9.  Identification of alcohol-binding site(s) in proteins using diazirine-based photoaffinity labeling and mass spectrometry.

Authors:  Joydip Das
Journal:  Chem Biol Drug Des       Date:  2018-10-22       Impact factor: 2.817

10.  Structural Identification and Systematic Comparison of Phorbol Ester, Dioleoylglycerol, Alcohol and Sevoflurane Binding Sites in PKCδ C1A Domain.

Authors:  Lijie Shi
Journal:  Protein J       Date:  2018-12       Impact factor: 2.371

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