Literature DB >> 16940416

Polymerization of fibrin: Direct observation and quantification of individual B:b knob-hole interactions.

Rustem I Litvinov1, Oleg V Gorkun, Dennis K Galanakis, Sergiy Yakovlev, Leonid Medved, Henry Shuman, John W Weisel.   

Abstract

The polymerization of fibrin occurs primarily through interactions between N-terminal A- and B-knobs, which are exposed by the cleavage of fibrinopeptides A and B, respectively, and between corresponding a- and b-holes in the gamma- and beta-modules. Of the potential knob-hole interactions--A:a, B:b, A:b, and B:a--the first has been shown to be critical for fibrin formation, but the roles of the others have remained elusive. Using laser tweezers-based force spectroscopy, we observed and quantified individual B:b and A:b interactions. Both desA-fibrin with exposed A-knobs and desB-fibrin bearing B-knobs interacted with fragment D from the gammaD364H fibrinogen containing b-holes but no functional a-holes. The strength of single B:b interactions was found to be 15 to 20 pN, approximately 6-fold weaker than A:a interactions. B:b binding was abrogated by B-knob mimetic peptide, the (beta15-66)2 fragment containing 2 B-knobs, and a monoclonal antibody against the beta15-21 sequence. The interaction of desB-fibrin with fragment D containing a- and b-holes produced the same forces that were insensitive to A-knob mimetic peptide, suggesting that B:a interactions were absent. These results directly demonstrate for the first time B:b binding mediated by natural B-knobs exposed in a fibrin monomer.

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Year:  2006        PMID: 16940416      PMCID: PMC1785071          DOI: 10.1182/blood-2006-07-033910

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  58 in total

1.  A model of fibrin formation based on crystal structures of fibrinogen and fibrin fragments complexed with synthetic peptides.

Authors:  Z Yang; I Mochalkin; R F Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

Review 2.  The structure and function of the alpha C domains of fibrinogen.

Authors:  J W Weisel; L Medved
Journal:  Ann N Y Acad Sci       Date:  2001       Impact factor: 5.691

Review 3.  Crystal structure studies on fibrinogen and fibrin.

Authors:  R F Doolittle; Z Yang; I Mochalkin
Journal:  Ann N Y Acad Sci       Date:  2001       Impact factor: 5.691

4.  The formation of beta fibrin requires a functional a site.

Authors:  K A Hogan; B Bolliger; N Okumura; S T Lord
Journal:  Ann N Y Acad Sci       Date:  2001       Impact factor: 5.691

5.  Computer modeling of fibrin polymerization kinetics correlated with electron microscope and turbidity observations: clot structure and assembly are kinetically controlled.

Authors:  J W Weisel; C Nagaswami
Journal:  Biophys J       Date:  1992-07       Impact factor: 4.033

6.  Interaction between complementary polymerization sites in the structural D and E domains of human fibrin.

Authors:  T P Ugarova; A Z Budzynski
Journal:  J Biol Chem       Date:  1992-07-05       Impact factor: 5.157

7.  Role of the alpha C domains of fibrin in clot formation.

Authors:  O V Gorkun; Y I Veklich; L V Medved; A H Henschen; J W Weisel
Journal:  Biochemistry       Date:  1994-06-07       Impact factor: 3.162

8.  Localization of a fibrin polymerization site complementary to Gly-His-Arg sequence.

Authors:  L V Medved; S V Litvinovich; T P Ugarova; N I Lukinova; V N Kalikhevich; Z A Ardemasova
Journal:  FEBS Lett       Date:  1993-04-12       Impact factor: 4.124

9.  The sequence of cleavage of fibrinopeptides from fibrinogen is important for protofibril formation and enhancement of lateral aggregation in fibrin clots.

Authors:  J W Weisel; Y Veklich; O Gorkun
Journal:  J Mol Biol       Date:  1993-07-05       Impact factor: 5.469

10.  Unusual A alpha 16Arg-->Cys dysfibrinogenaemic family: absence of normal A alpha-chains in fibrinogen from two of four heterozygous siblings.

Authors:  D Galanakis; S Spitzer; I Scharrer
Journal:  Blood Coagul Fibrinolysis       Date:  1993-02       Impact factor: 1.276

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  30 in total

1.  Building better fibrin knob mimics: an investigation of synthetic fibrin knob peptide structures in solution and their dynamic binding with fibrinogen/fibrin holes.

Authors:  Sarah E Stabenfeldt; J Jared Gossett; Thomas H Barker
Journal:  Blood       Date:  2010-05-18       Impact factor: 22.113

2.  Structural hierarchy governs fibrin gel mechanics.

Authors:  Izabela K Piechocka; Rommel G Bacabac; Max Potters; Fred C Mackintosh; Gijsje H Koenderink
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Direct evidence for specific interactions of the fibrinogen alphaC-domains with the central E region and with each other.

Authors:  Rustem I Litvinov; Sergiy Yakovlev; Galina Tsurupa; Oleg V Gorkun; Leonid Medved; John W Weisel
Journal:  Biochemistry       Date:  2007-07-13       Impact factor: 3.162

4.  Molecular mechanisms, thermodynamics, and dissociation kinetics of knob-hole interactions in fibrin.

Authors:  Olga Kononova; Rustem I Litvinov; Artem Zhmurov; Andrey Alekseenko; Chia Ho Cheng; Silvi Agarwal; Kenneth A Marx; John W Weisel; Valeri Barsegov
Journal:  J Biol Chem       Date:  2013-05-28       Impact factor: 5.157

Review 5.  Mechanisms of fibrin polymerization and clinical implications.

Authors:  John W Weisel; Rustem I Litvinov
Journal:  Blood       Date:  2013-01-10       Impact factor: 22.113

6.  Mechanistic Basis for the Binding of RGD- and AGDV-Peptides to the Platelet Integrin αIIbβ3.

Authors:  Olga Kononova; Rustem I Litvinov; Dmitry S Blokhin; Vladimir V Klochkov; John W Weisel; Joel S Bennett; Valeri Barsegov
Journal:  Biochemistry       Date:  2017-03-22       Impact factor: 3.162

Review 7.  Fibrin-based biomaterials: modulation of macroscopic properties through rational design at the molecular level.

Authors:  Ashley C Brown; Thomas H Barker
Journal:  Acta Biomater       Date:  2013-09-19       Impact factor: 8.947

8.  Structural Basis of Interfacial Flexibility in Fibrin Oligomers.

Authors:  Artem Zhmurov; Anna D Protopopova; Rustem I Litvinov; Pavel Zhukov; Alexander R Mukhitov; John W Weisel; Valeri Barsegov
Journal:  Structure       Date:  2016-09-29       Impact factor: 5.006

9.  Distinct specificity and single-molecule kinetics characterize the interaction of pathogenic and non-pathogenic antibodies against platelet factor 4-heparin complexes with platelet factor 4.

Authors:  Rustem I Litvinov; Serge V Yarovoi; Lubica Rauova; Valeri Barsegov; Bruce S Sachais; Ann H Rux; Jillian L Hinds; Gowthami M Arepally; Douglas B Cines; John W Weisel
Journal:  J Biol Chem       Date:  2013-10-04       Impact factor: 5.157

10.  Fibrinogen beta-chain tyrosine nitration is a prothrombotic risk factor.

Authors:  Ioannis Parastatidis; Leonor Thomson; Anne Burke; Irina Chernysh; Chandrasekaran Nagaswami; Jetze Visser; Sheryl Stamer; Daniel C Liebler; George Koliakos; Harry F G Heijnen; Garret A Fitzgerald; John W Weisel; Harry Ischiropoulos
Journal:  J Biol Chem       Date:  2008-09-25       Impact factor: 5.157

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