Literature DB >> 16939804

Random forests for microarrays.

Adele Cutler1, John R Stevens.   

Abstract

Random Forests is a powerful multipurpose tool for predicting and understanding data. If gene expression data come from known groups or classes (e.g., tumor patients and controls), Random Forests can rank the genes in terms of their usefulness in separating the groups. When the groups are unknown, Random Forests uses an intrinsic measure of the similarity of the genes to extract useful multivariate structure, including clusters. This chapter summarizes the Random Forests methodology and illustrates its use on freely available data sets.

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Year:  2006        PMID: 16939804     DOI: 10.1016/S0076-6879(06)11023-X

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  11 in total

1.  Determination of CERES TOA fluxes using Machine learning algorithms. Part I: Classification and retrieval of CERES cloudy and clear scenes.

Authors:  Bijoy Vengasseril Thampi; Takmeng Wong; Constantin Lukashin; Norman G Loeb
Journal:  J Atmos Ocean Technol       Date:  2017-10-01       Impact factor: 2.075

Review 2.  Random forests for genetic association studies.

Authors:  Benjamin A Goldstein; Eric C Polley; Farren B S Briggs
Journal:  Stat Appl Genet Mol Biol       Date:  2011-07-12

3.  Predicting response to short-acting bronchodilator medication using Bayesian networks.

Authors:  Blanca E Himes; Ann Chen Wu; Qing Ling Duan; Barbara Klanderman; Augusto A Litonjua; Kelan Tantisira; Marco F Ramoni; Scott T Weiss
Journal:  Pharmacogenomics       Date:  2009-09       Impact factor: 2.533

4.  Global patterns and predictions of seafloor biomass using random forests.

Authors:  Chih-Lin Wei; Gilbert T Rowe; Elva Escobar-Briones; Antje Boetius; Thomas Soltwedel; M Julian Caley; Yousria Soliman; Falk Huettmann; Fangyuan Qu; Zishan Yu; C Roland Pitcher; Richard L Haedrich; Mary K Wicksten; Michael A Rex; Jeffrey G Baguley; Jyotsna Sharma; Roberto Danovaro; Ian R MacDonald; Clifton C Nunnally; Jody W Deming; Paul Montagna; Mélanie Lévesque; Jan Marcin Weslawski; Maria Wlodarska-Kowalczuk; Baban S Ingole; Brian J Bett; David S M Billett; Andrew Yool; Bodil A Bluhm; Katrin Iken; Bhavani E Narayanaswamy
Journal:  PLoS One       Date:  2010-12-30       Impact factor: 3.240

5.  Automated time activity classification based on global positioning system (GPS) tracking data.

Authors:  Jun Wu; Chengsheng Jiang; Douglas Houston; Dean Baker; Ralph Delfino
Journal:  Environ Health       Date:  2011-11-14       Impact factor: 5.984

6.  Expression Profiles of miRNA Subsets Distinguish Human Colorectal Carcinoma and Normal Colonic Mucosa.

Authors:  Daniel F Pellatt; John R Stevens; Roger K Wolff; Lila E Mullany; Jennifer S Herrick; Wade Samowitz; Martha L Slattery
Journal:  Clin Transl Gastroenterol       Date:  2016-03-10       Impact factor: 4.488

7.  Identification of candidate biomarkers of liver hydatid disease via microarray profiling, bioinformatics analysis, and machine learning.

Authors:  Jinwu Peng; Zhili Duan; Yamin Guo; Xiaona Li; Xiaoqin Luo; Xiumin Han; Junming Luo
Journal:  J Int Med Res       Date:  2021-03       Impact factor: 1.671

8.  Association between Arsenic Level, Gene Expression in Asian Population, and In Vitro Carcinogenic Bladder Tumor.

Authors:  Sonalika Singhal; Nathan A Ruprecht; Donald Sens; Kouhyar Tavakolian; Kevin L Gardner; Sandeep K Singhal
Journal:  Oxid Med Cell Longev       Date:  2022-01-07       Impact factor: 7.310

9.  An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.

Authors:  Huaxia Qin; Michael W Y Chan; Sandya Liyanarachchi; Curtis Balch; Dustin Potter; Irene J Souriraj; Alfred S L Cheng; Francisco J Agosto-Perez; Elena V Nikonova; Pearlly S Yan; Huey-Jen Lin; Kenneth P Nephew; Joel H Saltz; Louise C Showe; Tim H M Huang; Ramana V Davuluri
Journal:  BMC Syst Biol       Date:  2009-07-17

10.  Bioinformatics identification of lncRNA biomarkers associated with the progression of esophageal squamous cell carcinoma.

Authors:  Jun Yu; Xiaoliu Wu; Kaidan Huang; Ming Zhu; Xiaomei Zhang; Yuanying Zhang; Senqing Chen; Xinyu Xu; Qin Zhang
Journal:  Mol Med Rep       Date:  2019-05-02       Impact factor: 2.952

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