Literature DB >> 16939794

Analysis of a multifactor microarray study using Partek genomics solution.

Tom Downey1.   

Abstract

Partek Genomics Suite (Partek GS) is a powerful statistical analysis and interactive visualization software solution designed to analyze single channel oligonucleotide (Affymetrix) and two-color cDNA microarrays, as well as data from other emerging genomic and proteomic technologies. This chapter takes a simple study on obesity and susceptibility to type 2 diabetes and uses it as an example that demonstrates how Partek GS can be used to analyze data arising from a microarray experiment.

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Year:  2006        PMID： 16939794     DOI： 10.1016/S0076-6879(06)11013-7

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


  39 in total

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Authors:  James H Doroshow; Agnes Juhasz; Yun Ge; Susan Holbeck; Jiamo Lu; Smitha Antony; Yongzhong Wu; Guojian Jiang; Krishnendu Roy
Journal:  Biochem Pharmacol       Date:  2012-01-24       Impact factor: 5.858

2.  Air toxics and epigenetic effects: ozone altered microRNAs in the sputum of human subjects.

Authors:  Rebecca C Fry; Julia E Rager; Rebecca Bauer; Elizabeth Sebastian; David B Peden; Ilona Jaspers; Neil E Alexis
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2014-04-25       Impact factor: 5.464

3.  Genetic susceptibility to chronic hepatitis is inherited codominantly in Helicobacter hepaticus-infected AB6F1 and B6AF1 hybrid male mice, and progression to hepatocellular carcinoma is linked to hepatic expression of lipogenic genes and immune function-associated networks.

Authors:  Alexis García; Melanie M Ihrig; Rebecca C Fry; Yan Feng; Sandy Xu; Samuel R Boutin; Arlin B Rogers; Suresh Muthupalani; Leona D Samson; James G Fox
Journal:  Infect Immun       Date:  2008-02-19       Impact factor: 3.441

4.  Evidence for Alteration of Gene Regulatory Networks through MicroRNAs of the HIV-infected brain: novel analysis of retrospective cases.

Authors:  Erick T Tatro; Erick R Scott; Timothy B Nguyen; Shahid Salaria; Sugato Banerjee; David J Moore; Eliezer Masliah; Cristian L Achim; Ian P Everall
Journal:  PLoS One       Date:  2010-04-26       Impact factor: 3.240

5.  Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15.

Authors:  Yumei Zheng; Na Ren; Huai Wang; Arnold J Stromberg; Sharyn E Perry
Journal:  Plant Cell       Date:  2009-09-18       Impact factor: 11.277

6.  HORMONOMETER: a tool for discerning transcript signatures of hormone action in the Arabidopsis transcriptome.

Authors:  Dina Volodarsky; Noam Leviatan; Andrei Otcheretianski; Robert Fluhr
Journal:  Plant Physiol       Date:  2009-06-17       Impact factor: 8.340

7.  CD1d gene is a target for a novel amplicon at 1q22-23.1 in human hepatocellular carcinoma.

Authors:  Shi-Guang Zhang; Wen-Qin Song; Ying-Tang Gao; Bin Yang; Zhi Du
Journal:  Mol Biol Rep       Date:  2010-01       Impact factor: 2.316

8.  Singlet oxygen signatures are detected independent of light or chloroplasts in response to multiple stresses.

Authors:  Avishai Mor; Eugene Koh; Lev Weiner; Shilo Rosenwasser; Hadas Sibony-Benyamini; Robert Fluhr
Journal:  Plant Physiol       Date:  2014-03-05       Impact factor: 8.340

9.  Correlation between DNA methylation and gene expression in the brains of patients with bipolar disorder and schizophrenia.

Authors:  Chao Chen; Chunling Zhang; Lijun Cheng; James L Reilly; Jeffrey R Bishop; John A Sweeney; Hua-Yun Chen; Elliot S Gershon; Chunyu Liu
Journal:  Bipolar Disord       Date:  2014-09-22       Impact factor: 6.744

10.  Gene expression patterns in CD4+ peripheral blood cells in healthy subjects and stage IV melanoma patients.

Authors:  Sara J Felts; Virginia P Van Keulen; Adam D Scheid; Kathleen S Allen; Renee K Bradshaw; Jin Jen; Tobias Peikert; Sumit Middha; Yuji Zhang; Matthew S Block; Svetomir N Markovic; Larry R Pease
Journal:  Cancer Immunol Immunother       Date:  2015-08-06       Impact factor: 6.968
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