Literature DB >> 16939224

A combined NMR and molecular dynamics study of the transmembrane solubility and diffusion rate profile of dioxygen in lipid bilayers.

M Sameer Al-Abdul-Wahid1, Ching-Hsing Yu, Ihor Batruch, Ferenc Evanics, Régis Pomès, R Scott Prosser.   

Abstract

The transmembrane profile of oxygen solubility and diffusivity in a lipid bilayer was assessed by (13)C NMR of the resident lipids (sn-2-perdeuterio-1-myristelaidoyl-2-myristoyl-sn-glycero-3-phosphocholine) in combination with molecular dynamics (MD) simulations. At an oxygen partial pressure of 50 atm, distinct chemical shift perturbations of a paramagnetic origin were observed, spanning a factor of 3.2 within the sn-1 chain and an overall factor of 10 from the headgroup to the hydrophobic interior. The distinguishing feature of the (13)C NMR shift perturbation measurements, in comparison to ESR and fluorescence quenching measurements, is that the local accessibility of oxygen is achieved for nearly all carbon atoms in a single experiment with atomic resolution and without the use of a probe molecule. MD simulations of an oxygenated and hydrated lipid bilayer provided an immersion depth distribution of all carbon nuclei, in addition to the distribution of oxygen concentration and diffusivity with immersion depth. All oxygen-induced (13)C NMR chemical shift perturbations could be reasonably approximated by simply accounting for the MD-derived immersion depth distribution of oxygen in the bilayer, appropriately averaged according to the immersion depth distribution of the (13)C nuclei. Second-order effects in the paramagnetic shift are attributed to the collisionally accessible solid angle or to the propensity of the valence electrons in the vicinity of a given nuclear spin to be polarized or delocalized by oxygen. A method is presented to measure such effects. The excellent agreement between MD and NMR provides an important cross-validation of the two techniques.

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Year:  2006        PMID: 16939224     DOI: 10.1021/bi060270f

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Topology and immersion depth of an integral membrane protein by paramagnetic rates from dissolved oxygen.

Authors:  M Sameer Al-Abdul-Wahid; Raffaello Verardi; Gianluigi Veglia; R Scott Prosser
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

2.  Position-Dependent Diffusion Tensors in Anisotropic Media from Simulation: Oxygen Transport in and through Membranes.

Authors:  An Ghysels; Richard M Venable; Richard W Pastor; Gerhard Hummer
Journal:  J Chem Theory Comput       Date:  2017-05-19       Impact factor: 6.006

3.  Influence of Cholesterol on the Oxygen Permeability of Membranes: Insight from Atomistic Simulations.

Authors:  Rachel J Dotson; Casey R Smith; Kristina Bueche; Gary Angles; Sally C Pias
Journal:  Biophys J       Date:  2017-06-06       Impact factor: 4.033

4.  Reduced Oxygen Permeability upon Protein Incorporation Within Phospholipid Bilayers.

Authors:  Rachel J Dotson; Sally C Pias
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

5.  Factors determining barrier properties to oxygen transport across model and cell plasma membranes based on EPR spin-label oximetry.

Authors:  Witold K Subczynski; Justyna Widomska; Natalia Stein; Harold M Swartz
Journal:  Appl Magn Reson       Date:  2021-08-18       Impact factor: 0.974

6.  Is the cholesterol bilayer domain a barrier to oxygen transport into the eye lens?

Authors:  Elzbieta Plesnar; Robert Szczelina; Witold K Subczynski; Marta Pasenkiewicz-Gierula
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-10-25       Impact factor: 3.747

7.  Generation of superoxide and singlet oxygen from alpha-tocopherolquinone and analogues.

Authors:  Ana G Crisostomo; Raphael B Moreno; Suppiah Navaratnam; James A Wilkinson; Roger H Bisby
Journal:  Free Radic Res       Date:  2007-06
  7 in total

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