Literature DB >> 16936793

Benchmarking DNA barcodes: An assessment using available primate sequences.

Mehrdad Hajibabaei1, Gregory Ac Singer, Donal A Hickey.   

Abstract

DNA barcoding has been recently promoted as a method for both assigning specimens to known species and for discovering new and cryptic species. Here we test both the potential and the limitations of DNA barcodes by analysing a group of well-studied organisms--the primates. Our results show that DNA barcodes provide enough information to efficiently identify and delineate primate species, but that they cannot reliably uncover many of the deeper phylogenetic relationships. Our conclusion is that these short DNA sequences do not contain enough information to build reliable molecular phylogenies or define new species, but that they can provide efficient sequence tags for assigning unknown specimens to known species. As such, DNA barcoding provides enormous potential for use in global biodiversity studies.

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Year:  2006        PMID: 16936793     DOI: 10.1139/g06-025

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  17 in total

1.  COI (cytochrome oxidase-I) sequence based studies of Carangid fishes from Kakinada coast, India.

Authors:  M Persis; A Chandra Sekhar Reddy; L M Rao; G D Khedkar; K Ravinder; K Nasruddin
Journal:  Mol Biol Rep       Date:  2008-10-12       Impact factor: 2.316

2.  Limited performance of DNA barcoding in a diverse community of tropical butterflies.

Authors:  Marianne Elias; Ryan I Hill; Keith R Willmott; Kanchon K Dasmahapatra; Andrew V Z Brower; James Mallet; Chris D Jiggins
Journal:  Proc Biol Sci       Date:  2007-11-22       Impact factor: 5.349

3.  Neotropical bats: estimating species diversity with DNA barcodes.

Authors:  Elizabeth L Clare; Burton K Lim; M Brock Fenton; Paul D N Hebert
Journal:  PLoS One       Date:  2011-07-26       Impact factor: 3.240

4.  FBIS: A regional DNA barcode archival & analysis system for Indian fishes.

Authors:  Naresh Sahebrao Nagpure; Iliyas Rashid; Ajey Kumar Pathak; Mahender Singh; Shri Prakash Singh; Uttam Kumar Sarkar
Journal:  Bioinformation       Date:  2012-05-31

5.  A tale of two seas: contrasting patterns of population structure in the small-spotted catshark across Europe.

Authors:  Chrysoula Gubili; David W Sims; Ana Veríssimo; Paolo Domenici; Jim Ellis; Panagiotis Grigoriou; Andrew F Johnson; Matthew McHugh; Francis Neat; Andrea Satta; Giuseppe Scarcella; Bárbara Serra-Pereira; Alen Soldo; Martin J Genner; Andrew M Griffiths
Journal:  R Soc Open Sci       Date:  2014-11-12       Impact factor: 2.963

6.  TreeParser-aided Klee diagrams display taxonomic clusters in DNA barcode and nuclear gene datasets.

Authors:  Mark Y Stoeckle; Cameron Coffran
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

7.  Enhanced primers for amplification of DNA barcodes from a broad range of marine metazoans.

Authors:  Jorge Lobo; Pedro M Costa; Marcos A L Teixeira; Maria S G Ferreira; Maria H Costa; Filipe O Costa
Journal:  BMC Ecol       Date:  2013-09-10       Impact factor: 2.964

8.  Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring.

Authors:  Mehrdad Hajibabaei; Gregory A C Singer; Elizabeth L Clare; Paul D N Hebert
Journal:  BMC Biol       Date:  2007-06-13       Impact factor: 7.431

9.  iBarcode.org: web-based molecular biodiversity analysis.

Authors:  Gregory A C Singer; Mehrdad Hajibabaei
Journal:  BMC Bioinformatics       Date:  2009-06-16       Impact factor: 3.169

10.  Assessing the effect of varying sequence length on DNA barcoding of fungi.

Authors:  Xiang Jia Min; Donal A Hickey
Journal:  Mol Ecol Notes       Date:  2007-05-01
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