Literature DB >> 16936719

Kinetic flux profiling of nitrogen assimilation in Escherichia coli.

Jie Yuan1, William U Fowler, Elizabeth Kimball, Wenyun Lu, Joshua D Rabinowitz.   

Abstract

We present a new method for probing cellular metabolic fluxes that is based on the kinetics of assimilation of isotope-labeled nutrient into a diversity of downstream metabolites. In the case of nitrogen assimilation, half-maximal labeling of most metabolites occurs in 10-300 s. Fluxes measured on the basis of the kinetics of nitrogen assimilation in exponentially growing E. coli agree well with those fluxes predicted to allow optimal biomass production.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16936719     DOI: 10.1038/nchembio816

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  63 in total

1.  Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer.

Authors:  Wenyun Lu; Michelle F Clasquin; Eugene Melamud; Daniel Amador-Noguez; Amy A Caudy; Joshua D Rabinowitz
Journal:  Anal Chem       Date:  2010-04-15       Impact factor: 6.986

2.  Genetics and regulation of the major enzymes of alanine synthesis in Escherichia coli.

Authors:  Sok Ho Kim; Barbara L Schneider; Larry Reitzer
Journal:  J Bacteriol       Date:  2010-08-20       Impact factor: 3.490

3.  Inference and Prediction of Metabolic Network Fluxes.

Authors:  Zoran Nikoloski; Richard Perez-Storey; Lee J Sweetlove
Journal:  Plant Physiol       Date:  2015-09-21       Impact factor: 8.340

4.  Real-time metabolome profiling of the metabolic switch between starvation and growth.

Authors:  Hannes Link; Tobias Fuhrer; Luca Gerosa; Nicola Zamboni; Uwe Sauer
Journal:  Nat Methods       Date:  2015-09-14       Impact factor: 28.547

5.  Conservation of the metabolomic response to starvation across two divergent microbes.

Authors:  Matthew J Brauer; Jie Yuan; Bryson D Bennett; Wenyun Lu; Elizabeth Kimball; David Botstein; Joshua D Rabinowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

6.  A putative ABC transporter, hatABCDE, is among molecular determinants of pyomelanin production in Pseudomonas aeruginosa.

Authors:  Ryan C Hunter; Dianne K Newman
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

7.  Differentiating metabolites formed from de novo synthesis versus macromolecule decomposition.

Authors:  Jie Yuan; Joshua D Rabinowitz
Journal:  J Am Chem Soc       Date:  2007-07-07       Impact factor: 15.419

8.  Diverse metabolic model parameters generate similar methionine cycle dynamics.

Authors:  Matthew Piazza; Xiao-Jiang Feng; Joshua D Rabinowitz; Herschel Rabitz
Journal:  J Theor Biol       Date:  2007-12-23       Impact factor: 2.691

Review 9.  Understanding metabolism with flux analysis: From theory to application.

Authors:  Ziwei Dai; Jason W Locasale
Journal:  Metab Eng       Date:  2016-09-22       Impact factor: 9.783

10.  Dissecting enzyme regulation by multiple allosteric effectors: nucleotide regulation of aspartate transcarbamoylase.

Authors:  Joshua D Rabinowitz; Jennifer J Hsiao; Kimberly R Gryncel; Evan R Kantrowitz; Xiao-Jiang Feng; Genyuan Li; Herschel Rabitz
Journal:  Biochemistry       Date:  2008-05-03       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.