Literature DB >> 16935928

ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data.

Tsun-Po Yang1, Ting-Yu Chang, Chi-Hung Lin, Ming-Ta Hsu, Hsei-Wei Wang.   

Abstract

UNLABELLED: ArrayFusion annotates conventional CGH results and various types of microarray data from a range of platforms (cDNA, expression, exon, SNP, array-CGH and ChIP-on-chip) and converts them into standard formats which can be visualized in genome browsers (Affymetrix Integrated Genome Browser and GBrowse in the HapMap Project). Converted files can then be imported simultaneously into a single genome browser to benefit a collective interpretation between different array results. ArrayFusion therefore provides a new type of tool facilitating the integration of CGH and array results to provide new experimental directions. AVAILABILITY: http://microarray.ym.edu.tw/tools/arrayfusion

Mesh:

Year:  2006        PMID: 16935928     DOI: 10.1093/bioinformatics/btl457

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  12 in total

1.  Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations.

Authors:  Hsei-Wei Wang; Yu-Hsuan Wu; Jui-Yu Hsieh; Muh-Lii Liang; Meng-En Chao; Da-Jung Liu; Ming-Ta Hsu; Tai-Tong Wong
Journal:  BMC Genomics       Date:  2010-02-24       Impact factor: 3.969

2.  CNAReporter: a GenePattern pipeline for the generation of clinical reports of genomic alterations.

Authors:  Yuri Kotliarov; Serdar Bozdag; Hangjiong Cheng; Stefan Wuchty; Jean-Claude Zenklusen; Howard A Fine
Journal:  BMC Med Genomics       Date:  2010-04-09       Impact factor: 3.063

3.  Mesenchymal stem cells from human umbilical cord express preferentially secreted factors related to neuroprotection, neurogenesis, and angiogenesis.

Authors:  Jui-Yu Hsieh; Hsei-Wei Wang; Shing-Jyh Chang; Ko-Hsun Liao; I-Hui Lee; Wei-Shiang Lin; Chun-Hsien Wu; Wen-Yu Lin; Shu-Meng Cheng
Journal:  PLoS One       Date:  2013-08-22       Impact factor: 3.240

4.  Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems.

Authors:  Raffaele Fronza; Michele Tramonti; William R Atchley; Christine Nardini
Journal:  BMC Bioinformatics       Date:  2011-03-30       Impact factor: 3.169

5.  MicroRNA-34a modulates genes involved in cellular motility and oxidative phosphorylation in neural precursors derived from human umbilical cord mesenchymal stem cells.

Authors:  Shing-Jyh Chang; Shun-Long Weng; Jui-Yu Hsieh; Tao-Yeuan Wang; Margaret Dah-Tsyr Chang; Hsei-Wei Wang
Journal:  BMC Med Genomics       Date:  2011-09-19       Impact factor: 3.063

6.  Increased epithelial stem cell traits in advanced endometrial endometrioid carcinoma.

Authors:  Shing-Jyh Chang; Tao-Yeuan Wang; Chan-Yen Tsai; Tzu-Fang Hu; Margaret Dah-Tsyr Chang; Hsei-Wei Wang
Journal:  BMC Genomics       Date:  2009-12-16       Impact factor: 3.969

7.  Genetic module and miRNome trait analyses reflect the distinct biological features of endothelial progenitor cells from different anatomic locations.

Authors:  Cheng-Chung Cheng; Hung-Hao Lo; Tse-Shun Huang; Yi-Chieh Cheng; Shi-Ting Chang; Shing-Jyh Chang; Hsei-Wei Wang
Journal:  BMC Genomics       Date:  2012-09-03       Impact factor: 3.969

8.  Distinct angiogenesis roles and surface markers of early and late endothelial progenitor cells revealed by functional group analyses.

Authors:  Cheng-Chung Cheng; Shing-Jyh Chang; Yu-Neng Chueh; Tse-Shun Huang; Po-Hsun Huang; Shu-Meng Cheng; Tsung-Neng Tsai; Jaw-Wen Chen; Hsei-Wei Wang
Journal:  BMC Genomics       Date:  2013-03-15       Impact factor: 3.969

9.  SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels.

Authors:  Mathijs A Sanders; Roel G W Verhaak; Wendy M C Geertsma-Kleinekoort; Saman Abbas; Sebastiaan Horsman; Peter J van der Spek; Bob Löwenberg; Peter J M Valk
Journal:  BMC Genomics       Date:  2008-01-25       Impact factor: 3.969

10.  Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures.

Authors:  Chih-Hung Jen; Tsun-Po Yang; Chien-Yi Tung; Shu-Han Su; Chi-Hung Lin; Ming-Ta Hsu; Hsei-Wei Wang
Journal:  BMC Bioinformatics       Date:  2008-01-28       Impact factor: 3.169

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