Literature DB >> 16934997

Isotope labeling and theoretical study of the formation of a3* ions from protonated tetraglycine.

Travis Cooper1, Erach Talaty, Jerod Grove, Michael Van Stipdonk, Sándor Suhai, Béla Paizs.   

Abstract

Extensive 13C, 15N, and 2H labeling of tetraglycine was used to investigate the b3+ --> a3* reaction during low-energy collision-induced dissociation (CID) in a quadrupole ion-trap mass spectrometer. The patterns observed with respect to the retention or elimination of the isotope labels demonstrate that the reaction pathway involves elimination of CO and NH3. The ammonia molecule includes 2 H atoms from amide or amino positions, and one from an alpha-carbon position. The loss of NH3 does not involve elimination of the N-terminal amino group but, instead, the N atom of the presumed oxazolone ring in the b3+ ion. The CO molecule eliminated is the carbonyl group of the same oxazolone ring, and the alpha-carbon H atom is transferred from the amino acid adjacent to the oxazolone ring. Quantum chemical calculations indicate a multistep reaction cascade involving CO loss on the b3 --> a3 pathway and loss of NH=CH2 from the a3 ion to form b2. In the postreaction complex of b2 and NH=CH2, the latter can be attacked by the N-terminal amino group of the former. The product of this attack, an isomerized a3 ion, can eliminate NH3 from its N-terminus to form a3*. Calculations suggest that the ammonia and a3* species can form various ion-molecule complexes, and NH3 can initiate relay-type mobilization of the oxazolone H atoms from alpha-carbon positions to form a new oxazolone isomer. This multiple-step reaction scheme clearly explains the isotope labeling results, including unexpected scrambling of H atoms from alpha-carbon positions.

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Year:  2006        PMID: 16934997     DOI: 10.1016/j.jasms.2006.07.012

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  24 in total

1.  The effect of the initial water of hydration on the energetics, structures, and H/D exchange mechanism of a family of pentapeptides: an experimental and theoretical study.

Authors:  Thomas Wyttenbach; Béla Paizs; Perdita Barran; Linda Breci; Dengfeng Liu; Sándor Suhai; Vicki H Wysocki; Michael T Bowers
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

2.  An investigation of fragmentation mechanisms of doubly protonated tryptic peptides.

Authors:  X J Tang; R K Boyd
Journal:  Rapid Commun Mass Spectrom       Date:  1992-11       Impact factor: 2.419

3.  Chemical ionization of amino acids.

Authors:  C W Tsang; A G Harrison
Journal:  J Am Chem Soc       Date:  1976-03-17       Impact factor: 15.419

4.  Role of the site of protonation in the low-energy decompositions of gas-phase peptide ions.

Authors:  K A Cox; S J Gaskell; M Morris; A Whiting
Journal:  J Am Soc Mass Spectrom       Date:  1996-06       Impact factor: 3.109

5.  The structure and fragmentation of B n (n≥3) ions in peptide spectra.

Authors:  T Yalcin; I G Csizmadia; M R Peterson; A G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  1996-03       Impact factor: 3.109

6.  Formation of a2+ ions of protonated peptides. An ab initio study.

Authors:  B Paizs; Z Szlávik; G Lendvay; K Vékey; S Suhai
Journal:  Rapid Commun Mass Spectrom       Date:  2000       Impact factor: 2.419

7.  Structure and fragmentation of b2 ions in peptide mass spectra.

Authors:  A G Harrison; I G Csizmadia; T H Tang
Journal:  J Am Soc Mass Spectrom       Date:  2000-05       Impact factor: 3.109

8.  Fragmentation of protonated oligoalanines: amide bond cleavage and beyond.

Authors:  Alex G Harrison; Alex B Young
Journal:  J Am Soc Mass Spectrom       Date:  2004-12       Impact factor: 3.109

9.  Why Are B ions stable species in peptide spectra?

Authors:  T Yalcin; C Khouw; I G Csizmadia; M R Peterson; A G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  1995-12       Impact factor: 3.109

10.  Influence of cysteine to cysteic acid oxidation on the collision-activated decomposition of protonated peptides: Evidence for intraionic interactions.

Authors:  O Burlet; C Y Yang; S J Gaskell
Journal:  J Am Soc Mass Spectrom       Date:  1992-05       Impact factor: 3.109

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  19 in total

1.  Rearrangement pathways of the a (4) ion of protonated YGGFL characterized by IR spectroscopy and modeling.

Authors:  Béla Paizs; Benjamin J Bythell; Philippe Maître
Journal:  J Am Soc Mass Spectrom       Date:  2012-01-24       Impact factor: 3.109

2.  Effect of the His residue on the cyclization of b ions.

Authors:  Benjamin J Bythell; Michaela Knapp-Mohammady; Béla Paizs; Alex G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  2010-05-13       Impact factor: 3.109

3.  Towards understanding the tandem mass spectra of protonated oligopeptides. 2: The proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp).

Authors:  Christian Bleiholder; Sándor Suhai; Alex G Harrison; Béla Paizs
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-12       Impact factor: 3.109

4.  Structures of a(n)* ions derived from protonated pentaglycine and pentaalanine: results from IRMPD spectroscopy and DFT calculations.

Authors:  Junfang Zhao; Justin Kai-Chi Lau; Josipa Grzetic; Udo H Verkerk; Jos Oomens; K W Michael Siu; Alan C Hopkinson
Journal:  J Am Soc Mass Spectrom       Date:  2013-09-12       Impact factor: 3.109

5.  Backbone cleavages and sequential loss of carbon monoxide and ammonia from protonated AGG: a combined tandem mass spectrometry, isotope labeling, and theoretical study.

Authors:  Benjamin J Bythell; Douglas F Barofsky; Francesco Pingitore; Michael J Polce; Ping Wang; Chrys Wesdemiotis; Béla Paizs
Journal:  J Am Soc Mass Spectrom       Date:  2007-04-10       Impact factor: 3.109

6.  On the dynamics of fragment isomerization in collision-induced dissociation of peptides.

Authors:  Nick C Polfer; Brian C Bohrer; Manolo D Plasencia; Béla Paizs; David E Clemmer
Journal:  J Phys Chem A       Date:  2008-01-24       Impact factor: 2.781

7.  Studies of peptide a- and b-type fragment ions using stable isotope labeling and integrated ion mobility/tandem mass spectrometry.

Authors:  Isabel Riba Garcia; Kevin Giles; Robert H Bateman; Simon J Gaskell
Journal:  J Am Soc Mass Spectrom       Date:  2008-09-30       Impact factor: 3.109

8.  Why are a(3) ions rarely observed?

Authors:  Julia M Allen; Alawee H Racine; Ashley M Berman; Jeffrey S Johnson; Benjamin J Bythell; Béla Paizs; Gary L Glish
Journal:  J Am Soc Mass Spectrom       Date:  2008-09-30       Impact factor: 3.109

9.  Thermodynamics and Reaction Mechanisms of Decomposition of the Simplest Protonated Tripeptide, Triglycine: A Guided Ion Beam and Computational Study.

Authors:  Abhigya Mookherjee; Michael J Van Stipdonk; P B Armentrout
Journal:  J Am Soc Mass Spectrom       Date:  2017-02-14       Impact factor: 3.109

10.  Influence of a Gamma Amino Acid on the Structures and Reactivity of Peptide a(3) Ions.

Authors:  Matthew C Bernier; Bela Paizs; Vicki H Wysocki
Journal:  Int J Mass Spectrom       Date:  2012-04-15       Impact factor: 1.986

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