Literature DB >> 16934358

In plants, highly expressed genes are the least compact.

Xin-Ying Ren1, Oscar Vorst, Mark W E J Fiers, Willem J Stiekema, Jan-Peter Nap.   

Abstract

In both the monocot rice and the dicot Arabidopsis, highly expressed genes have more and longer introns and a larger primary transcript than genes expressed at a low level: higher expressed genes tend to be less compact than lower expressed genes. In animal genomes, it is the other way round. Although the length differences in plant genes are much smaller than in animals, these findings indicate that plant genes are in this respect different from animal genes. Explanations for the relationship between gene configuration and gene expression in animals might be (or might have been) less important in plants. We speculate that selection, if any, on genome configuration has taken a different turn after the divergence of plants and animals.

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Year:  2006        PMID: 16934358     DOI: 10.1016/j.tig.2006.08.008

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  74 in total

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Authors:  Jer-Young Lin; Robert M Stupar; Christian Hans; David L Hyten; Scott A Jackson
Journal:  Plant Cell       Date:  2010-08-20       Impact factor: 11.277

2.  Genome-wide analysis of HSP90 gene family in the Mediterranean olive (Olea europaea subsp. europaea) provides insight into structural patterns, evolution and functional diversity.

Authors:  Inchirah Bettaieb; Jihen Hamdi; Dhia Bouktila
Journal:  Physiol Mol Biol Plants       Date:  2020-11-19

3.  Evidence for gene length as a determinant of gene coexpression in protein complexes.

Authors:  Xiaoshu Chen; Suhua Shi; Xionglei He
Journal:  Genetics       Date:  2009-07-20       Impact factor: 4.562

4.  An overview of the introns-first theory.

Authors:  David Penny; Marc P Hoeppner; Anthony M Poole; Daniel C Jeffares
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

5.  Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression.

Authors:  Junli Zhou; Xiangfeng Wang; Kun He; Jean-Benoit F Charron; Axel A Elling; Xing Wang Deng
Journal:  Plant Mol Biol       Date:  2010-04       Impact factor: 4.076

6.  Genome-wide functional analysis of human 5' untranslated region introns.

Authors:  Can Cenik; Adnan Derti; Joseph C Mellor; Gabriel F Berriz; Frederick P Roth
Journal:  Genome Biol       Date:  2010-03-11       Impact factor: 13.583

7.  Mutational biases and selective forces shaping the structure of Arabidopsis genes.

Authors:  Salvatore Camiolo; Domenico Rau; Andrea Porceddu
Journal:  PLoS One       Date:  2009-07-27       Impact factor: 3.240

8.  In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure.

Authors:  Hangxing Yang
Journal:  Biol Direct       Date:  2009-11-21       Impact factor: 4.540

9.  Properties of untranslated regions of the S. cerevisiae genome.

Authors:  Tamir Tuller; Eytan Ruppin; Martin Kupiec
Journal:  BMC Genomics       Date:  2009-08-22       Impact factor: 3.969

10.  Rice sHsp genes: genomic organization and expression profiling under stress and development.

Authors:  Neelam K Sarkar; Yeon-Ki Kim; Anil Grover
Journal:  BMC Genomics       Date:  2009-08-24       Impact factor: 3.969

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