Literature DB >> 16931112

Tunneling of intermediates in enzyme-catalyzed reactions.

Amanda Weeks1, Liliya Lund, Frank M Raushel.   

Abstract

A fascinating group of enzymes has been shown to possess multiple active sites connected by intramolecular tunnels for the passage of reactive intermediates from the site of production to the site of utilization. In most of the examples studied to date, the binding of substrates at one active site enhances the formation of a reaction intermediate at an adjacent active site. The most common intermediate is ammonia, derived from the hydrolysis of glutamine, but molecular tunnels for the passage of indole, carbon monoxide, acetaldehyde and carbamate have also been identified. The architectural features of these molecular tunnels are quite different from one another, suggesting that they evolved independently.

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Year:  2006        PMID: 16931112     DOI: 10.1016/j.cbpa.2006.08.008

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  23 in total

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Journal:  J Biol Chem       Date:  2009-04-15       Impact factor: 5.157

2.  Experimental approaches to kinetics of gas diffusion in hydrogenase.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-06       Impact factor: 11.205

Review 3.  Natural strategies for the spatial optimization of metabolism in synthetic biology.

Authors:  Christina M Agapakis; Patrick M Boyle; Pamela A Silver
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

4.  A combined theoretical and experimental study of the ammonia tunnel in carbamoyl phosphate synthetase.

Authors:  Yubo Fan; Liliya Lund; Qiang Shao; Yi-Qin Gao; Frank M Raushel
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

5.  Biological channeling of a reactive intermediate in the bifunctional enzyme DmpFG.

Authors:  Natalie E Smith; Alice Vrielink; Paul V Attwood; Ben Corry
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

6.  Conformational changes involving ammonia tunnel formation and allosteric control in GMP synthetase.

Authors:  Justin C Oliver; Ravidra Gudihal; John W Burgner; Anthony M Pedley; Alexander T Zwierko; V Jo Davisson; Rebecca S Linger
Journal:  Arch Biochem Biophys       Date:  2014-01-13       Impact factor: 4.013

7.  Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.

Authors:  Ursula Pieper; Ranyee Chiang; Jennifer J Seffernick; Shoshana D Brown; Margaret E Glasner; Libusha Kelly; Narayanan Eswar; J Michael Sauder; Jeffrey B Bonanno; Subramanyam Swaminathan; Stephen K Burley; Xiaojing Zheng; Mark R Chance; Steven C Almo; John A Gerlt; Frank M Raushel; Matthew P Jacobson; Patricia C Babbitt; Andrej Sali
Journal:  J Struct Funct Genomics       Date:  2009-02-14

Review 8.  Evolution of efficient pathways for degradation of anthropogenic chemicals.

Authors:  Shelley D Copley
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

9.  Sequestration of a highly reactive intermediate in an evolving pathway for degradation of pentachlorophenol.

Authors:  Itamar Yadid; Johannes Rudolph; Klara Hlouchova; Shelley D Copley
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-15       Impact factor: 11.205

10.  Formylglycinamide ribonucleotide amidotransferase from Thermotoga maritima: structural insights into complex formation.

Authors:  Mariya Morar; Aaron A Hoskins; JoAnne Stubbe; Steven E Ealick
Journal:  Biochemistry       Date:  2008-07-03       Impact factor: 3.162

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