Literature DB >> 16930570

B3LYP/6-311++G** study of structure and spin-spin coupling constant in methyl 2-O-sulfo-alpha-L-iduronate.

Milos Hricovíni1.   

Abstract

Structures of three most stable conformers ((1)C4, (4)C1, (2)S0) of methyl 2-O-sulfo-alpha-L-iduronate monosodium salt have been analyzed by DFT using the B3LYP/6-311++G** method. The optimized geometries confirmed the influence of both 2-O-sulfate and carboxylate groups upon the pyranose ring geometry. The computed energies showed that the chair (1)C4 form is the most stable one. Time-averaged DFT-calculated proton-proton and proton-carbon spin-spin coupling constants agree with the experimental data and indicate that only two chair forms contribute to the conformational equilibrium of methyl 2-O-sulfo-alpha-L-iduronate monosodium salt. The influence of the charged groups upon the magnitudes of spin-spin coupling constants is also discussed.

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Year:  2006        PMID: 16930570     DOI: 10.1016/j.carres.2006.07.010

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  3 in total

1.  Solution Conformation of Heparin Tetrasaccharide. DFT Analysis of Structure and Spin⁻Spin Coupling Constants.

Authors:  Miloš Hricovíni; Michal Hricovíni
Journal:  Molecules       Date:  2018-11-21       Impact factor: 4.411

2.  Residual dipolar coupling investigation of a heparin tetrasaccharide confirms the limited effect of flexibility of the iduronic acid on the molecular shape of heparin.

Authors:  Lan Jin; Milos Hricovíni; Jon A Deakin; Malcolm Lyon; Dusan Uhrín
Journal:  Glycobiology       Date:  2009-07-31       Impact factor: 4.313

3.  Glycosaminoglycan monosaccharide blocks analysis by quantum mechanics, molecular dynamics, and nuclear magnetic resonance.

Authors:  Sergey A Samsonov; Stephan Theisgen; Thomas Riemer; Daniel Huster; M Teresa Pisabarro
Journal:  Biomed Res Int       Date:  2014-04-07       Impact factor: 3.411

  3 in total

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