| Literature DB >> 16930492 |
Joan E Sprinson1, Elizabeth S Lawton, Travis C Porco, Jennifer M Flood, Janice L Westenhouse.
Abstract
BACKGROUND: The Centers for Disease Control and Prevention (CDC) convened a workgroup to revise the tuberculosis (TB) case report in the United States of America (U.S.). The group proposed substantial revisions. Study objectives were to systematically assess the validity and completeness of reported TB case surveillance data in California and to inform TB case report revision process.Entities:
Mesh:
Year: 2006 PMID: 16930492 PMCID: PMC1617097 DOI: 10.1186/1471-2458-6-217
Source DB: PubMed Journal: BMC Public Health ISSN: 1471-2458 Impact factor: 3.295
Summary of variables and validation measures estimated in the medical record and case report
| n = 34 (77%) | 1, 3, 4, 7, 8, 9, | 'Yes' | 'Yes' | 2 × 2 tables: | |
| Categorical | 2, 6, 14, 23, | Various values | Various values | n × n tables | |
| n = 10 (23%) | 2 × 2 tables: collapsed n × n tables to n (2 × 2) tables† | ||||
| Sensitivity | |||||
| 5, 18, 20 | n × n tables (values=96–268): | ||||
| Dates | n = 7 (78%) | Month/Day/Year | MM/DD/YYYY | MM/DD/YYYY | Absolute mean difference (days) |
| n = 2 (22%) | Month/Year | MM/DD/YYYY | MM/YYYY | Absolute mean difference (months) | |
* See Table 2, first column, for variable number (Note: these numbers do not correspond to the variable numbers on the RVCT form).
† For each of the n values, we constructed a 2 × 2 table from (1) the number of individuals for which the medical record and RVCT both exhibited that value, (2) the number for which only the medical record exhibited that value, (3) the number for which only the RVCT exhibited that value, and (4) the number for which neither exhibited that value. Specifically, for each k (k = 1, ..., n), we constructed a collapsed 2 × 2 table of values
(i = 1, 2; j = 1, 2) according to for each k = 1, ..., n. with abeing the values in the original n × n table (l = 1, ..., n, m = 1, ...n). (Here, δis the Kronecker delta, i.e., δ= 1 if a = b and 0 otherwise.)
Weighted mean validation measures for categorical variables in Report of Verified Case of Tuberculosis (RVCT)
| 1 | Sex | 98.1 | (96.7, 99.0) | 99.7 | (98.0, 99.9) | 97.5 | (95.3, 98.6) |
| 2 | Race | 97.7 | (96.3, 98.6) | ND‡ | ND | ND | ND |
| White | ND | ND | 99.2 | (97.5, 99.7) | 97.0 | (94.4, 98.4) | |
| Black | ND | ND | 95.3 | (87.1, 98.4) | 97.9 | (88.8, 99.7) | |
| Asian-Pacific Islander | ND | ND | 97.5 | (94.9, 98.8) | 98.4 | (96.3, 99.3) | |
| American Indian/Alaska Native | ND | ND | 50.0 | (12.8, 87.2) | 100.0 | -§ | |
| 3 | Ethnicity | 98.5 | (97.2, 99.1) | 97.6 | (94.7, 98.9) | 98.1 | (95.5, 99.2) |
| Country of origin | |||||||
| 4 | U.S.-born | 98.9 | (97.7, 99.4) | 99.1 | (95.1, 99.9) | 96.6 | (92.8, 98.4) |
| 5 | Other country of origin | 96.0 | (93.6, 97.5) | ND | ND | ND | ND |
| 6 | Occupation | 84.4 | (80.7, 87.5) | ND | ND | ND | ND |
| Health care worker | ND | ND | 78.2 | (46.4, 93.7) | 70.5 | (41.3, 89.0) | |
| Migratory agricultural worker | ND | ND | 51.8 | (25.1, 77.5) | 81.1 | (38.3, 96.7) | |
| Other occupation | ND | ND | 76.4 | (69.8, 81.9) | 89.0 | (83.3, 92.9) | |
| Not employed within past 24 months | ND | ND | 93.5 | (89.5, 96.0) | 82.2 | (76.9, 86.5) | |
| 7 | Resident of long-term care facility at diagnosis | 98.3 | (97.1, 99.0) | 67.8 | (47.1, 83.3) | 76.8 | (57.8, 88.9) |
| 8 | Resident of correctional facility at diagnosis | 99.0 | (97.7, 99.6) | 69.7 | (45.7, 86.3) | 100.0 | - |
| 9 | Homeless within past 1–2 years|| | 99.1 | (96.9, 99.7) | 97.3 | (92.6, 99.0) | 95.1 | (75.9, 99.2) |
| 10 | Injecting drug user within past year | 98.1 | (96.5, 99.0) | 63.5 | (41.5, 81.0) | 86.5 | (59.8, 96.5) |
| 11 | Non-injecting drug user within past year | 96.6 | (94.6, 97.9) | 70.1 | (55.2, 81.7) | 90.9 | (74.6, 97.1) |
| 12 | Excess alcohol use within past year | 91.8 | (88.8, 94.0) | 69.9 | (61.0, 77.6) | 96.8 | (89.3, 99.1) |
| 13 | Previous TB | 94.6 | (92.3, 96.2) | 57.6 | (45.0, 69.3) | 93.5 | (81.9, 97.9) |
| 14 | Site of disease | 92.5 | (90.4, 94.2) | ND | ND | ND | ND |
| Pulmonary only | ND | ND | 96.7 | (94.6, 97.9) | 96.2 | (94.3, 97.4) | |
| Extra-pulmonary only | ND | ND | 98.6 | (96.8, 99.4) | 81.6 | (74.4, 87.0) | |
| Both pulmonary and extra-pulmonary | ND | ND | 51.1 | (39.7, 62.4) | 86.9 | (73.9, 94.0) | |
| 15 | Sputum smear | 89.6 | (86.0, 92.3) | 90.5 | (85.8, 93.7) | 92.2 | (87.9, 95.1) |
| 16 | Sputum culture | 96.8 | (94.2, 98.2) | 100.0 | - | 96.8 | (94.2, 98.2) |
| 17 | Smear of tissue/body fluids (non-sputum) | 49.2 | (38.4, 60.0) | 31.2 | (21.0, 43.6) | 98.7 | (98.1, 99.2) |
| 18 | Tissue/body fluid type (non-sputum) | 76.4 | (59.3, 87.8) | ND | ND | ND | ND |
| 19 | Culture of tissue/body fluid (non-sputum) | 98.2 | (94.6, 99.4) | 100.0 | - | 98.2 | (94.6, 99.4) |
| 20 | Tissue/body fluid type (non-sputum) | 73.9 | (66.0, 80.6) | ND | ND | ND | ND |
| Chest x-ray | |||||||
| 21 | Abnormal/normal | 96.0 | (94.0, 97.3) | 99.1 | (97.6, 99.7) | 96.8 | (94.8, 98.0) |
| 22 | If abnormal: cavitary/non-cavitary** | 90.9 | (88.0, 93.2) | 75.1 | (66.3, 82.3) | 86.2 | (78.0, 91.7) |
| 23 | If abnormal: stable/worsening/improving | 46.8 | (37.0, 56.9) | ND | ND | ND | ND |
| Stable | ND | ND | 49.9 | (36.0, 63.7) | 53.7 | (39.0, 67.9) | |
| Worsening | ND | ND | 52.0 | (38.0, 65.7) | 51.7 | (37.8, 65.4) | |
| Improving | ND | ND | 26.9 | (8.7, 58.6) | 19.8 | (6.5, 46.8) | |
| 24 | Initial drug susceptibility testing done | 100.0 | - | 100.0 | - | 100.0 | - |
| Results of initial drug susceptibility testing†† | |||||||
| 25 | Isoniazid | 99.2 | (98.1, 99.7) | 92.5 | (82.6, 97.0) | 100.0 | - |
| 26 | Rifampin | 100.0 | - | 100.0 | - | 100.0 | - |
| 27 | Pyrazinamide | 92.1 | (89.3, 94.2) | 88.1 | (68.8, 96.1) | 100.0 | - |
| 28 | Ethambutol | 100.0 | - | 100.0 | - | 100.0 | - |
| 29 | Streptomycin | 98.3 | (96.8, 99.1) | 93.2 | (78.8, 98.0) | 92.0 | (78.7, 97.3) |
| Initial treatment regimen | |||||||
| 30 | Isoniazid | 98.2 | (96.8, 99.0) | 99.6 | (98.8, 99.9) | 98.6 | (97.2, 99.3) |
| 31 | Rifampin | 98.7 | (97.5, 99.4) | 99.9 | (99.7, 100.0) | 98.8 | (97.6, 99.4) |
| 32 | Pyrazinamide | 96.7 | (95.1, 97.8) | 98.1 | (96.7, 98.9) | 98.4 | (97.1, 99.1) |
| 33 | Ethambutol | 95.9 | (94.0, 97.2) | 98.8 | (97.4, 99.4) | 96.5 | (94.6, 97.8) |
| 34 | Streptomycin | 98.7 | (97.7, 99.3) | 40.3 | (16.3, 70.1) | 38.1 | (14.1, 69.9) |
| 35 | Sputum culture conversion documented | 85.4 | (81.1, 88.8) | 93.3 | (89.5, 95.7) | 87.8 | (83.0, 91.3) |
| 36 | Reason therapy stopped‡‡ | 97.9 | (96.4, 98.8) | ND | ND | ND | ND |
| Completion of therapy | ND | ND | 97.8 | (96.0, 98.8) | 100.0 | - | |
| Lost/uncooperative or refused therapy | ND | ND | 98.4 | (98.4, 98.4) | 62.9 | (46.1, 77.1) | |
| Died | ND | ND | 99.2 | (96.6, 99.8) | 93.3 | (84.2, 97.4) | |
| 37 | Provider type | 73.4 | (69.8, 76.7) | ND | ND | ND | ND |
| Health Department only (HD) | ND | ND | 74.7 | (69.7, 79.1) | 90.3 | (86.7, 93.0) | |
| Private/Other only | ND | ND | 79.6 | (74.6, 83.9) | 80.0 | (74.2, 84.8) | |
| Both HD and Private/Other | ND | ND | 38.6 | (26.4, 52.5) | 18.1 | (12.0, 26.4) | |
| 38 | Therapy administration | 48.6 | (44.4, 52.8) | ND | ND | ND | ND |
| Directly Observed Therapy (DOT) only | ND | ND | 29.7 | (10.5, 60.4) | 1.1 | (0.4, 2.9) | |
| Self-administered Therapy (SAT) only | ND | ND | 72.0 | (66.7, 76.7) | 88.3 | (83.1, 92.0) | |
| Both DOT and SAT | ND | ND | 26.4 | (21.3, 32.2) | 82.7 | (73.1, 89.4) | |
| 39 | Final drug susceptibility testing done ‡‡ | 100.0 | - | 100.0 | - | 100.0 | - |
| Results of final drug susceptibility testing††§§ | |||||||
| 40 | Isoniazid | 100.0 | - | 100.0 | - | 100.0 | - |
| 41 | Rifampin | 98.4 | (97.3, 99.0) | 92.6 | (79.7, 97.5) | 100.0 | - |
| 42 | Pyrazinamide | 90.5 | (59.5, 98.4) | - | - | - | - |
| 43 | Ethambutol | 90.3 | (59.0, 98.4) | - | - | - | - |
| 44 | Streptomycin | 100.0 | - | 100.0 | - | 100.0 | - |
Note: All results are presented as survey-weighted mean estimates for the statewide cohort from which the sample was drawn.
* Variable number (see Table 1)
† Confidence interval
‡ Not determined, by design
§ No value computed (e.g., division by 0)
|| RVCT defines homeless within 1 year of diagnosis; medical record review defined homeless within 2 years of diagnosis
** RVCT values: cavitary, non-cavitary consistent with TB, non-cavitary not consistent with TB; medical record review values: cavitary, abnormal/non-cavitary
†† As a result of a very small number of second-line drug susceptibility test results, these results are not presented.
‡‡ Excludes 9 cases: 1 case without TB; 5 cases reported as 'moved' on RVCT; 3 cases reported as 'other" on RVCT
§§ Based on small number of cases with final susceptibility testing performed; therefore estimates are subject to considerable instability
Weighted absolute mean difference between dates on the case report and the medical record
| Birth date | 48.4 | 39.9 |
| Treatment start | 2.6 | 17.0 |
| Isolate collection for drug susceptibility testing | 13.0 | 26.1 |
| First positive culture | 6.1 | 31.0 |
| First consistently negative culture | 25.0 | 15.1 |
| Treatment stop | 19.2 | 11.3 |
| Isolate collection for final susceptibility testing | 110.9* | 44.5 |
| Case reported to local health department | 0.74 | 10.0 |
| Entry into U.S. | 11.5 | 20.2 |
Note: All results are presented as survey-weighted mean estimates for the statewide cohort from which the sample was drawn.
* Based on small number of cases with final susceptibility testing performed; therefore estimate is subject to considerable instability
Weighted mean estimates for the proportion of missing/unknown values on case report and medical record
| 1 | Sex | 0.0 | -‡ | 0.0 | - |
| 2 | Race | 0.0 | - | 1.3 | (0.7, 2.6) |
| 3 | Ethnicity | 0.0 | - | 1.4 | (0.7, 2.6) |
| Country of origin | |||||
| 4 | U.S.-born | 0.6 | (0.2, 1.5) | 2.7 | (1.7, 4.2) |
| 5 | Other country of origin | 0.0 | - | 0.1 | (0.1, 0.1) |
| 6 | Occupation | 8.2 | (6.3, 10.6) | 23.6 | (20.4, 27.1) |
| 7 | Resident of long-term care facility at diagnosis | 0.2 | (0.1, 0.4) | 7.6 | (5.8, 9.9) |
| 8 | Resident of correctional facility at diagnosis | 0.1 | (0.0, 0.3) | 6.7 | (5.1, 8.9) |
| 9 | Homeless within past 1–2 years§ | 1.9 | (1.1, 3.2) | 63.8 | (59.9, 67.5) |
| 10 | Injecting drug user within past year | 8.0 | (6.2, 10.2) | 22.1 | (19.1, 25.4) |
| 11 | Non-injecting drug user within past year | 7.8 | (6.0, 10.0) | 23.4 | (20.3, 26.8) |
| 12 | Excess alcohol use within past year | 7.6 | (5.9, 9.8) | 24.1 | (21.0, 27.6) |
| 13 | Previous TB | 0.0 | - | 19.7 | (16.8, 22.9) |
| 14 | Site of disease | 0.0 | - | 0.0 | - |
| 15 | Sputum smear|| | 4.9 | (3.4, 7.2) | 6.0 | (4.2, 8.7) |
| 16 | Sputum culture|| | 15.1 | (12.1, 18.7) | 14.4 | (11.5, 17.8) |
| 17 | Smear of tissue/body fluids (non-sputum)|| | 0.6 | (0.3, 1.5) | 78.9 | (75.6, 82.0) |
| 18 | Tissue/body fluid type (non-sputum)* * | 0.0 | - | 0.0 | - |
| 19 | Culture of tissue/other body fluid (non-sputum)|| | 0.3 | (0.1, 1.1) | 63.6 | (59.8, 67.2) |
| 20 | Tissue/body fluid type (non-sputum) * * | 0.0 | - | 0.0 | - |
| Chest x-ray results | |||||
| 21 | Abnormal/normal|| | 0.6 | (0.3, 1.5) | 8.7 | (6.8, 11.2) |
| 22 | If abnormal: cavitary/non-cavitary** | 0.1 | (0.0, 0.4) | 0.0 | - |
| 23 | If abnormal: stable/worsening/improving** | 68.9 | (64.8, 72.7) | 45.3 | (40.9, 49.7) |
| 24 | Initial susceptibility testing done | 0.0 | - | 1.7 | (0.9, 3.1) |
| Results of initial susceptibility testing, if done†† | |||||
| 25 | Isoniazid|| | 0.0 | - | 3.1 | (2.0, 4.9) |
| 26 | Rifampin|| | 0.7 | (0.3, 1.8) | 21.2 | (18.1, 24.5) |
| 27 | Pyrazinamide|| | 0.0 | - | 3.1 | (2.0, 4.9) |
| 28 | Ethambutol|| | 0.0 | - | 4.1 | (2.8, 6.0) |
| 29 | Streptomycin|| | 0.0 | - | 2.9 | (1.8, 4.6) |
| Initial treatment regimen | |||||
| 30 | Isoniazid | 0.0 | - | 0.0 | - |
| 31 | Rifampin | 0.0 | - | 0.0 | - |
| 32 | Pyrazinamide | 0.1 | (0.0, 0.3) | 0.0 | - |
| 33 | Ethambutol | 0.0 | - | 0.0 | - |
| 34 | Streptomycin | 0.1 | (0.0, 0.3) | 0.0 | - |
| 35 | Sputum culture conversion, if ever sputum culture positive** | 1.6 | (0.7, 3.5) | 0.0 | - |
| 36 | Reason therapy stopped | 0.7 | (0.3, 1.5) | 0.0 | - |
| 37 | Provider type | 0.2 | (0.0, 1.3) | 0.0 | - |
| 38 | Therapy administration | 3.5 | (2.4, 5.2) | 0.0 | - |
| 39 | Final susceptibility testing done‡‡ | 0.0 | - | ||
| Results of final susceptibility testing, if done‡‡ | |||||
| 40 | Isoniazid||‡‡ | 0.0 | - | 5.7 | (1.5, 19.6) |
| 41 | Rifampin||‡‡ | 0.0 | - | 5.7 | (1.5, 19.6) |
| 42 | Pyrazinamide||‡‡ | 5.1 | (0.9, 25.2) | 11.9 | (4.9, 26.2) |
| 43 | Ethambutol||†† | 0.0 | - | 6.4 | (1.9, 19.3) |
| 44 | Streptomycin||‡‡ | 0.0 | - | 9.8 | (3.3, 25.4) |
| 45 | TB case report date | 0.0 | - | 5.7 | (4.1, 7.8) |
| 46 | Date of birth | 0.0 | - | 0.1 | (0.0, 0.3) |
| 47 | Date arrived in United States (foreign-born cases)** | 9.2 | (7.0, 12.1) | 15.1 | (12.1, 18.6) |
| 48 | Treatment start date | 0.0 | - | 0.0 | - |
| 49 | Date specimen collected for initial drug susceptibility testing** | 0.0 | - | 2.1 | (1.2, 3.7) |
| 50 | Date specimen collected on initially positive sputum culture** | 0.0 | - | 0.0 | - |
| 51 | Date specimen collected on first consistently negative sputum culture** | 1.4 | (0.5, 3.8) | 0.2 | (0.2, 0.2) |
| 52 | Date TB treatment stopped | 0.2 | (0.2, 0.2) | 0.0 | - |
| 53 | Date specimen collected for final drug susceptibility testing††‡‡ | 5.1 | (0.9, 25.2) | 9.8 | (3.3, 25.4) |
Note: All results are presented as survey-weighted mean estimates for the statewide cohort from which the sample was drawn.
* Variable number (see Table 1)
† Confidence Interval
‡ With an estimate of 0.0% missing/unknown, a confidence interval was not determined
§ RVCT defines homeless within 1 year of diagnosis; medical record review defined homeless within 2 years of diagnosis
|| 'Not done' on RVCT excluded
** For nine RVCT variables, values are expected depending on the value of another variable (e.g., a value for type of chest x-ray abnormality or status of chest x-ray is expected only if chest x-ray results are abnormal). For these nine variables, we restricted our estimate of missing/unknown values to instances in which a subsequent value was expected, but missing, and did not count expected absent values as 'missing'.
†† As a result of a very small number of second-line drug susceptibility test results, these results are not presented, either for initial or final drug susceptibility testing.
‡‡ Based on small number of cases with final susceptibility testing performed; therefore estimate is subject to considerable instability