Literature DB >> 16929311

Enhancing and confirming the specificity of RNAi experiments.

Bryan R Cullen1.   

Abstract

RNA interference (RNAi) provides a powerful technique for the derivation and analysis of loss-of-function phenotypes in vertebrate cells, where alternative approaches are either arduous or frequently ineffective. RNAi, however, is not always totally specific, and confirming the specificity, and hence the validity, of data obtained using RNAi therefore forms an essential component of experiments that rely on this technique. Here I briefly review the potential pitfalls associated with RNAi, and then suggest experimental approaches that can be used to maximize the specificity of RNAi or to confirm that the data obtained are indeed valid.

Mesh:

Substances:

Year:  2006        PMID: 16929311     DOI: 10.1038/nmeth913

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  76 in total

1.  Down-regulation of homeobox genes MEIS1 and HOXA in MLL-rearranged acute leukemia impairs engraftment and reduces proliferation.

Authors:  Kira Orlovsky; Alexander Kalinkovich; Tanya Rozovskaia; Elias Shezen; Tomer Itkin; Hansjuerg Alder; Hatice Gulcin Ozer; Letizia Carramusa; Abraham Avigdor; Stefano Volinia; Arthur Buchberg; Alex Mazo; Orit Kollet; Corey Largman; Carlo M Croce; Tatsuya Nakamura; Tsvee Lapidot; Eli Canaani
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

2.  The TGFβ receptor-interacting protein km23-1/DYNLRB1 plays an adaptor role in TGFβ1 autoinduction via its association with Ras.

Authors:  Qunyan Jin; Wei Ding; Kathleen M Mulder
Journal:  J Biol Chem       Date:  2012-05-27       Impact factor: 5.157

3.  Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific.

Authors:  Kazuo Suzuki; Takaomi Ishida; Makoto Yamagishi; Chantelle Ahlenstiel; Sanjay Swaminathan; Katharine Marks; Daniel Murray; Erin M McCartney; Michael R Beard; Marina Alexander; Damian F J Purcell; David A Cooper; Toshiki Watanabe; Anthony D Kelleher
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

4.  Ataxia telangiectasia mutated (ATM) inhibition transforms human mammary gland epithelial cells.

Authors:  Stefano J Mandriota; Raphaële Buser; Laurence Lesne; Christelle Stouder; Vincent Favaudon; Pierre Maechler; Frédérique Béna; Virginie Clément; Curzio Rüegg; Roberto Montesano; André-Pascal Sappino
Journal:  J Biol Chem       Date:  2010-02-22       Impact factor: 5.157

5.  Large-scale production of dsRNA and siRNA pools for RNA interference utilizing bacteriophage phi6 RNA-dependent RNA polymerase.

Authors:  Antti P Aalto; L Peter Sarin; Alberdina A van Dijk; Mart Saarma; Minna M Poranen; Urmas Arumäe; Dennis H Bamford
Journal:  RNA       Date:  2007-01-19       Impact factor: 4.942

6.  A QUICK screen for Lrrk2 interaction partners--leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics.

Authors:  Andrea Meixner; Karsten Boldt; Marleen Van Troys; Manor Askenazi; Christian J Gloeckner; Matthias Bauer; Jarrod A Marto; Christophe Ampe; Norbert Kinkl; Marius Ueffing
Journal:  Mol Cell Proteomics       Date:  2010-09-27       Impact factor: 5.911

7.  PKC{delta} is activated in a dietary model of steatohepatitis and regulates endoplasmic reticulum stress and cell death.

Authors:  Michael W Greene; Christine M Burrington; Mary S Ruhoff; Andrew K Johnson; Tepsiri Chongkrairatanakul; Atipon Kangwanpornsiri
Journal:  J Biol Chem       Date:  2010-10-22       Impact factor: 5.157

8.  Remodeling a DNA-binding protein as a specific in vivo inhibitor of bacterial secretin PulD.

Authors:  Barbara Mouratou; Francis Schaeffer; Ingrid Guilvout; Diana Tello-Manigne; Anthony P Pugsley; Pedro M Alzari; Frédéric Pecorari
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-01       Impact factor: 11.205

9.  Krüppel-like factor 5 controls keratinocyte migration via the integrin-linked kinase.

Authors:  Yizeng Yang; Marie-Pier Tetreault; Yuliya A Yermolina; Bree G Goldstein; Jonathan P Katz
Journal:  J Biol Chem       Date:  2008-05-01       Impact factor: 5.157

10.  Molecular pathways: tumor-derived microvesicles and their interactions with immune cells in vivo.

Authors:  Ferdinando Pucci; Mikael J Pittet
Journal:  Clin Cancer Res       Date:  2013-02-20       Impact factor: 12.531

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.