Literature DB >> 16929108

Integrated state evaluation for the images of crystallization droplets utilizing linear and nonlinear classifiers.

Kuniaki Kawabata1, Kanako Saitoh, Mutsunori Takahashi, Mitsuaki Sugahara, Hajime Asama, Taketoshi Mishima, Masashi Miyano.   

Abstract

In a usual crystallization process, the researchers evaluate the protein crystallization growth states based on visual impressions and repeatedly assign scores throughout the growth process. Although the development of crystallization robotic systems has generally realised the automation of the setup and storage of crystallization samples, evaluation of crystallization states has not yet been completely automated. The method presented here attempts to categorize individual crystallization droplet images into five classes using multiple classifiers. In particular, linear and nonlinear classifiers are utilized. The algorithm is comprised of pre-processing, feature extraction from images using texture analysis and a categorization process using linear discriminant analysis (LDA) and support vector machine (SVM). The performance of this method has been evaluated by comparing the results obtained using the method with the results obtained by a human expert and the concordance rate was 84.4%.

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Year:  2006        PMID: 16929108     DOI: 10.1107/S090744490602614X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  3 in total

1.  High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center.

Authors:  Michihiro Sugahara; Yukuhiko Asada; Katsumi Shimizu; Hitoshi Yamamoto; Neratur K Lokanath; Hisashi Mizutani; Bagautdin Bagautdinov; Yoshinori Matsuura; Midori Taketa; Yuichi Kageyama; Naoko Ono; Yuko Morikawa; Yukiko Tanaka; Hiroki Shimada; Takanobu Nakamoto; Mitsuaki Sugahara; Masaki Yamamoto; Naoki Kunishima
Journal:  J Struct Funct Genomics       Date:  2008-08-02

2.  Image-based crystal detection: a machine-learning approach.

Authors:  Roy Liu; Yoav Freund; Glen Spraggon
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-11-18

3.  Establishing a training set through the visual analysis of crystallization trials. Part I: approximately 150,000 images.

Authors:  Edward H Snell; Joseph R Luft; Stephen A Potter; Angela M Lauricella; Stacey M Gulde; Michael G Malkowski; Mary Koszelak-Rosenblum; Meriem I Said; Jennifer L Smith; Christina K Veatch; Robert J Collins; Geoff Franks; Max Thayer; Christian Cumbaa; Igor Jurisica; George T Detitta
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-10-18
  3 in total

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