Literature DB >> 16926097

On the survival of peptide cations after electron capture: role of internal hydrogen bonding and microsolvation.

Tapas Chakraborty1, Anne I S Holm, Preben Hvelplund, Steen Brøndsted Nielsen, Jean-Christophe Poully, Esben S Worm, Evan R Williams.   

Abstract

Electron capture by both bare and microsolvated small peptide dications was investigated by colliding these ions with sodium vapor in an accelerator mass spectrometer to provide insight into processes that occur on the microsecond time frame. Survival of the intact peptide monocation after electron capture depends strongly on molecular size. For dipeptides, no intact reduced species were observed; the predominant ions correspond to loss of hydrogen and ammonia. In contrast, the intact reduced species was observed for larger peptides. Calculated structures indicate that the diprotonated dipeptide ions form largely extended structures with low probability of internal ionic hydrogen bonding (i.e., charge solvation) whereas internal ionic H-bonding occurs extensively for larger peptide dications. Solvation of the peptide ions with between one to seven methanol molecules reduces the total extent of H loss even for dipeptides where intact reduced species can survive more than a microsecond after electron capture. The yield of ions corresponding to cleavage of NCalpha bonds (c+ and z+* ions) does not depend strongly on peptide size but decreases with the extent of microsolvation for the dipeptide dications. H-bonding appears to play an important role for the survival of the intact reduced ions but less so for the formation of c+ and z+* ions. Our results indicate that electron capture predominantly occurs at the ammonium groups (at least 70 to 80%), and provides important new insights into the electron capture dissociation process.

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Year:  2006        PMID: 16926097     DOI: 10.1016/j.jasms.2006.07.018

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  14 in total

1.  Electron capture dissociation for structural characterization of multiply charged protein cations.

Authors:  R A Zubarev; D M Horn; E K Fridriksson; N L Kelleher; N A Kruger; M A Lewis; B K Carpenter; F W McLafferty
Journal:  Anal Chem       Date:  2000-02-01       Impact factor: 6.986

2.  Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue.

Authors:  Siu Kwan Sze; Ying Ge; HanBin Oh; Fred W McLafferty
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

3.  Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry.

Authors:  John E P Syka; Joshua J Coon; Melanie J Schroeder; Jeffrey Shabanowitz; Donald F Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

Review 4.  The role of electron capture dissociation in biomolecular analysis.

Authors:  Helen J Cooper; Kristina Håkansson; Alan G Marshall
Journal:  Mass Spectrom Rev       Date:  2005 Mar-Apr       Impact factor: 10.946

5.  A study of the positive and negative ion fast atom bombardment mass spectra of alpha-amino acids.

Authors:  W Kulik; W Heerma
Journal:  Biomed Environ Mass Spectrom       Date:  1988-04-15

6.  Electron attachment step in electron capture dissociation (ECD) and electron transfer dissociation (ETD).

Authors:  Iwona Anusiewicz; Joanna Berdys-Kochanska; Jack Simons
Journal:  J Phys Chem A       Date:  2005-07-07       Impact factor: 2.781

7.  Toward a general mechanism of electron capture dissociation.

Authors:  Erik A Syrstad; Frantisek Turecek
Journal:  J Am Soc Mass Spectrom       Date:  2005-02       Impact factor: 3.109

8.  N[bond]C(alpha) bond dissociation energies and kinetics in amide and peptide radicals. Is the dissociation a non-ergodic process?

Authors:  Frantisek Turecek
Journal:  J Am Chem Soc       Date:  2003-05-14       Impact factor: 15.419

9.  Mechanism and energetics of intramolecular hydrogen transfer in amide and peptide radicals and cation-radicals.

Authors:  Frantisek Turecek; Erik A Syrstad
Journal:  J Am Chem Soc       Date:  2003-03-19       Impact factor: 15.419

10.  Hypervalent ammonium radicals. Competitive N-C and N-H bond dissociations in methyl ammonium and ethyl ammonium.

Authors:  Chunxiang Yao; Frantisek Turecek
Journal:  Phys Chem Chem Phys       Date:  2005-03-07       Impact factor: 3.676

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  19 in total

1.  Reactions of microsolvated organic compounds at ambient surfaces: droplet velocity, charge state, and solvent effects.

Authors:  Abraham K Badu-Tawiah; Dahlia I Campbell; R Graham Cooks
Journal:  J Am Soc Mass Spectrom       Date:  2012-03-17       Impact factor: 3.109

2.  Nonergodicity in electron capture dissociation investigated using hydrated ion nanocalorimetry.

Authors:  Ryan D Leib; William A Donald; Matthew F Bush; Jeremy T O'Brien; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2007-04-15       Impact factor: 3.109

3.  Internal energy deposition in electron capture dissociation measured using hydrated divalent metal ions as nanocalorimeters.

Authors:  Ryan D Leib; William A Donald; Matthew F Bush; Jeremy T O'brien; Evan R Williams
Journal:  J Am Chem Soc       Date:  2007-03-30       Impact factor: 15.419

4.  Periodic sequence distribution of product ion abundances in electron capture dissociation of amphipathic peptides and proteins.

Authors:  Hisham Ben Hamidane; Huan He; Oleg Yu Tsybin; Mark R Emmett; Christopher L Hendrickson; Alan G Marshall; Yury O Tsybin
Journal:  J Am Soc Mass Spectrom       Date:  2009-02-13       Impact factor: 3.109

5.  Ground and Excited-Electronic-State Dissociations of Hydrogen-Rich and Hydrogen-Deficient Tyrosine Peptide Cation Radicals.

Authors:  Emilie Viglino; Cheuk Kuen Lai; Xiaoyan Mu; Ivan K Chu; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2016-06-08       Impact factor: 3.109

6.  Near-Edge Soft X-ray Absorption Mass Spectrometry of Protonated Melittin.

Authors:  Dmitrii Egorov; Sadia Bari; Rebecca Boll; Simon Dörner; Sascha Deinert; Simone Techert; Ronnie Hoekstra; Vicente Zamudio-Bayer; Rebecka Lindblad; Christine Bülow; Martin Timm; Bernd von Issendorff; J Tobias Lau; Thomas Schlathölter
Journal:  J Am Soc Mass Spectrom       Date:  2018-07-25       Impact factor: 3.109

7.  High-energy electron transfer dissociation (HE-ETD) using alkali metal targets for sequence analysis of post-translational peptides.

Authors:  Shigeo Hayakawa; Shinya Matsumoto; Mami Hashimoto; Kenichi Iwamoto; Hirofumi Nagao; Michisato Toyoda; Yasushi Shigeri; Michiko Tajiri; Yoshinao Wada
Journal:  J Am Soc Mass Spectrom       Date:  2010-06-09       Impact factor: 3.109

Review 8.  Radical solutions: Principles and application of electron-based dissociation in mass spectrometry-based analysis of protein structure.

Authors:  Frederik Lermyte; Dirk Valkenborg; Joseph A Loo; Frank Sobott
Journal:  Mass Spectrom Rev       Date:  2018-02-09       Impact factor: 10.946

9.  Host-guest hydrogen atom transfer induced by electron capture.

Authors:  Changtong Hao; Frantisek Turecek
Journal:  J Am Soc Mass Spectrom       Date:  2008-12-09       Impact factor: 3.109

10.  On the zwitterionic nature of gas-phase peptides and protein ions.

Authors:  Roberto Marchese; Rita Grandori; Paolo Carloni; Simone Raugei
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

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