Literature DB >> 16925831

EGASP: Introduction.

Martin G Reese1, Roderic Guigó.   

Abstract

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Year:  2006        PMID: 16925831      PMCID: PMC1810546          DOI: 10.1186/gb-2006-7-s1-s1

Source DB:  PubMed          Journal:  Genome Biol        ISSN: 1474-7596            Impact factor:   13.583


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  3 in total

1.  Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.

Authors:  Jill Cheng; Philipp Kapranov; Jorg Drenkow; Sujit Dike; Shane Brubaker; Sandeep Patel; Jeffrey Long; David Stern; Hari Tammana; Gregg Helt; Victor Sementchenko; Antonio Piccolboni; Stefan Bekiranov; Dione K Bailey; Madhavan Ganesh; Srinka Ghosh; Ian Bell; Daniela S Gerhard; Thomas R Gingeras
Journal:  Science       Date:  2005-03-24       Impact factor: 47.728

2.  Genome annotation assessment in Drosophila melanogaster.

Authors:  M G Reese; G Hartzell; N L Harris; U Ohler; J F Abril; S E Lewis
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

3.  The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

Authors:  Daniela S Gerhard; Lukas Wagner; Elise A Feingold; Carolyn M Shenmen; Lynette H Grouse; Greg Schuler; Steven L Klein; Susan Old; Rebekah Rasooly; Peter Good; Mark Guyer; Allison M Peck; Jeffery G Derge; David Lipman; Francis S Collins; Wonhee Jang; Steven Sherry; Mike Feolo; Leonie Misquitta; Eduardo Lee; Kirill Rotmistrovsky; Susan F Greenhut; Carl F Schaefer; Kenneth Buetow; Tom I Bonner; David Haussler; Jim Kent; Mark Kiekhaus; Terry Furey; Michael Brent; Christa Prange; Kirsten Schreiber; Nicole Shapiro; Narayan K Bhat; Ralph F Hopkins; Florence Hsie; Tom Driscoll; M Bento Soares; Tom L Casavant; Todd E Scheetz; Michael J Brown-stein; Ted B Usdin; Shiraki Toshiyuki; Piero Carninci; Yulan Piao; Dawood B Dudekula; Minoru S H Ko; Koichi Kawakami; Yutaka Suzuki; Sumio Sugano; C E Gruber; M R Smith; Blake Simmons; Troy Moore; Richard Waterman; Stephen L Johnson; Yijun Ruan; Chia Lin Wei; S Mathavan; Preethi H Gunaratne; Jiaqian Wu; Angela M Garcia; Stephen W Hulyk; Edwin Fuh; Ye Yuan; Anna Sneed; Carla Kowis; Anne Hodgson; Donna M Muzny; John McPherson; Richard A Gibbs; Jessica Fahey; Erin Helton; Mark Ketteman; Anuradha Madan; Stephanie Rodrigues; Amy Sanchez; Michelle Whiting; Anup Madari; Alice C Young; Keith D Wetherby; Steven J Granite; Peggy N Kwong; Charles P Brinkley; Russell L Pearson; Gerard G Bouffard; Robert W Blakesly; Eric D Green; Mark C Dickson; Alex C Rodriguez; Jane Grimwood; Jeremy Schmutz; Richard M Myers; Yaron S N Butterfield; Malachi Griffith; Obi L Griffith; Martin I Krzywinski; Nancy Liao; Ryan Morin; Ryan Morrin; Diana Palmquist; Anca S Petrescu; Ursula Skalska; Duane E Smailus; Jeff M Stott; Angelique Schnerch; Jacqueline E Schein; Steven J M Jones; Robert A Holt; Agnes Baross; Marco A Marra; Sandra Clifton; Kathryn A Makowski; Stephanie Bosak; Joel Malek
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

  3 in total
  7 in total

1.  Quantitative measures for the management and comparison of annotated genomes.

Authors:  Karen Eilbeck; Barry Moore; Carson Holt; Mark Yandell
Journal:  BMC Bioinformatics       Date:  2009-02-23       Impact factor: 3.169

2.  A standard variation file format for human genome sequences.

Authors:  Martin G Reese; Barry Moore; Colin Batchelor; Fidel Salas; Fiona Cunningham; Gabor T Marth; Lincoln Stein; Paul Flicek; Mark Yandell; Karen Eilbeck
Journal:  Genome Biol       Date:  2010-08-26       Impact factor: 13.583

Review 3.  From plant genomes to protein families: computational tools.

Authors:  Manuel Martinez
Journal:  Comput Struct Biotechnol J       Date:  2013-08-14       Impact factor: 7.271

4.  Determining promoter location based on DNA structure first-principles calculations.

Authors:  J Ramon Goñi; Alberto Pérez; David Torrents; Modesto Orozco
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

5.  Functional constraint and small insertions and deletions in the ENCODE regions of the human genome.

Authors:  Taane G Clark; Toby Andrew; Gregory M Cooper; Elliott H Margulies; James C Mullikin; David J Balding
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

6.  Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.

Authors:  Brian J Haas; Steven L Salzberg; Wei Zhu; Mihaela Pertea; Jonathan E Allen; Joshua Orvis; Owen White; C Robin Buell; Jennifer R Wortman
Journal:  Genome Biol       Date:  2008-01-11       Impact factor: 13.583

7.  Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.

Authors:  Nicholas J Schurch; Christian Cole; Alexander Sherstnev; Junfang Song; Céline Duc; Kate G Storey; W H Irwin McLean; Sara J Brown; Gordon G Simpson; Geoffrey J Barton
Journal:  PLoS One       Date:  2014-04-10       Impact factor: 3.240

  7 in total

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