Literature DB >> 16925676

Transcriptional readthrough of Hox genes Ubx and Antp and their divergent post-transcriptional control during crustacean evolution.

Yasuhiro Shiga1, Kazunori Sagawa, Rieko Takai, Hiromi Sakaguchi, Hideo Yamagata, Shigeo Hayashi.   

Abstract

Hox genes are in principle tandemly arranged in an order colinear with their order of expression along the anterior-posterior axis. Combinations of Hox proteins encode information that specifies the unique characteristics of axial regions in the metazoan body plan. The independent regulation of Hox genes achieved by differential promoter activity is essential for the expression of Hox proteins in distinct territories and thereby creating a full repertoire of Hox codes. Here we report the abundant expression of transcriptional readthrough products of two adjacent Hox genes, Ubx, and Antp, in five crustacean species of Branchiopoda and Malacostraca. Bicistronic mRNA places Antp under the control of the Ubx promoter, which is active in the posterior segments of two branchiopodans Daphnia and Artemia, and would normally reduce the complexity of Hox codes if translated. This does not occur, however, as the translational capability of the bicistronic mRNA is limited. In Daphnia, bicistronic Ubx/Antp mRNA produced no significant level of either UBX or ANTP. In Artemia, on the other hand, the bicistronic mRNA produced only UBX, and replaced the role of monocistronic Ubx mRNA. In this way, multiple post-transcriptional control mechanisms in two extant branchiopodans can be seen as preventing the potentially deleterious consequences of Hox gene fusion.

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Year:  2006        PMID: 16925676     DOI: 10.1111/j.1525-142X.2006.00114.x

Source DB:  PubMed          Journal:  Evol Dev        ISSN: 1520-541X            Impact factor:   1.930


  10 in total

1.  Silencing of an abdominal Hox gene during early development is correlated with limb development in a crustacean trunk.

Authors:  Cheryl C Hsia; Adam C Paré; Michael Hannon; Matthew Ronshaugen; William McGinnis
Journal:  Evol Dev       Date:  2010 Mar-Apr       Impact factor: 1.930

2.  Development of an RNA interference method in the cladoceran crustacean Daphnia magna.

Authors:  Yasuhiko Kato; Yasuhiro Shiga; Kaoru Kobayashi; Shin-ichi Tokishita; Hideo Yamagata; Taisen Iguchi; Hajime Watanabe
Journal:  Dev Genes Evol       Date:  2011-02-17       Impact factor: 0.900

3.  Gene expression suggests conserved aspects of Hox gene regulation in arthropods and provides additional support for monophyletic Myriapoda.

Authors:  Ralf Janssen; Graham E Budd
Journal:  Evodevo       Date:  2010-07-05       Impact factor: 2.250

Review 4.  There and Back Again: Hox Clusters Use Both DNA Strands.

Authors:  Elena L Novikova; Milana A Kulakova
Journal:  J Dev Biol       Date:  2021-07-15

5.  Transcriptional interference networks coordinate the expression of functionally related genes clustered in the same genomic loci.

Authors:  Zsolt Boldogköi
Journal:  Front Genet       Date:  2012-07-05       Impact factor: 4.599

6.  Extensive polycistronism and antisense transcription in the mammalian Hox clusters.

Authors:  Gaëll Mainguy; Jan Koster; Joost Woltering; Hans Jansen; Antony Durston
Journal:  PLoS One       Date:  2007-04-04       Impact factor: 3.240

Review 7.  Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers.

Authors:  Zhiyu Peng; Chengfu Yuan; Lucas Zellmer; Siqi Liu; Ningzhi Xu; D Joshua Liao
Journal:  J Cancer       Date:  2015-05-01       Impact factor: 4.207

8.  A New Standard for Crustacean Genomes: The Highly Contiguous, Annotated Genome Assembly of the Clam Shrimp Eulimnadia texana Reveals HOX Gene Order and Identifies the Sex Chromosome.

Authors:  James G Baldwin-Brown; Stephen C Weeks; Anthony D Long
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 3.416

Review 9.  Daphnia as a versatile model system in ecology and evolution.

Authors:  Dieter Ebert
Journal:  Evodevo       Date:  2022-08-08       Impact factor: 3.569

10.  Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters.

Authors:  Teresa D Shippy; Matthew Ronshaugen; Jessica Cande; Jianping He; Richard W Beeman; Michael Levine; Susan J Brown; Robin E Denell
Journal:  Dev Genes Evol       Date:  2008-04-08       Impact factor: 0.900

  10 in total

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