Literature DB >> 16925439

Noncovalent interactions within a synthetic receptor can reinforce guest binding.

Zaida Rodriguez-Docampo1, Sofia I Pascu, Stefan Kubik, Sijbren Otto.   

Abstract

Structural and thermodynamic data are presented on the binding properties of anion receptors containing two covalently linked cyclopeptide subunits that bind sulfate and iodide anions with micromolar affinity in aqueous solution. A synchrotron X-ray crystal structure of the sulfate complex of one receptor revealed that the anion is bound between the peptide rings of the biscyclopeptide. Intimate intramolecular contacts between the nonpolar surfaces of the proline rings of the individual receptor moieties in the complex suggest that hydrophobic interactions within the receptor that do not directly involve the guest contribute to complex stability. This finding is supported by a microcalorimetric analysis of the solvent dependence of complex stability, which showed that increasing the water content of the solvent has only a weak influence on the Gibbs energy of binding. Hence, the increasing amount of energy required for desolvating the binding partners in solutions containing more water is almost compensated by the increasingly favorable hydrophobic interactions. Further observations that suggest that guest-induced intra-receptor interactions contribute to guest binding are (i) anion binding of a monomeric cyclopeptide lacking the covalent linkage between the two rings leads to the formation of 2:1 complexes; (ii) in the crystal structure of the 2:1 iodide complex of this monotopic receptor, a similar arrangement of the two cyclopeptide rings has been found as in the sulfate complex of the biscyclopeptide; (iii) complex formation of the monomeric cyclopeptide in aqueous solution is highly cooperative with a large stability constant corresponding to the formation of the 2:1 complexes from relatively instable 1:1 complexes; (iv) the monomeric cyclopeptide forms only 1:1 anion complexes in DMSO where hydrophobic interactions do not take place; and (v) introducing polar hydroxy groups on the proline rings of the monomeric cyclopeptide disrupts cooperativity causing the formation of only 1:1 complexes even in aqueous solution. Taken together these observations demonstrate that, in addition to direct receptor-substrate interactions, noncovalent interactions between the two subunits of such biscyclopeptides contribute significantly to anion complex stability. Reinforcement of molecular recognition through intra-receptor interactions should be an attractive new strategy to boost host-guest affinities.

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Year:  2006        PMID: 16925439     DOI: 10.1021/ja062389h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Investigation of a Catenane with a Responsive Noncovalent Network: Mimicking Long-Range Responses in Proteins.

Authors:  Mee-Kyung Chung; Peter S White; Stephen J Lee; Michel R Gagné; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2016-09-29       Impact factor: 15.419

2.  Halogen bonding organocatalysis enhanced through intramolecular hydrogen bonds.

Authors:  Asia Marie S Riel; Daniel A Decato; Jiyu Sun; Orion B Berryman
Journal:  Chem Commun (Camb)       Date:  2022-01-27       Impact factor: 6.222

Review 3.  Synthetic Receptors Based on Abiotic Cyclo(pseudo)peptides.

Authors:  Stefan Kubik
Journal:  Molecules       Date:  2022-04-28       Impact factor: 4.927

4.  Mutual stabilisation between MII4L6 tetrahedra and MIIX42- metallate guests.

Authors:  Imogen A Riddell; Tanya K Ronson; Jonathan R Nitschke
Journal:  Chem Sci       Date:  2015-04-14       Impact factor: 9.825

5.  The flexibility-complementarity dichotomy in receptor-ligand interactions.

Authors:  Hongmei Sun; Christopher A Hunter; Eva Marina Llamas
Journal:  Chem Sci       Date:  2014-12-15       Impact factor: 9.825

Review 6.  Advanced in developmental organic and inorganic nanomaterial: a review.

Authors:  Khalisanni Khalid; Xuefei Tan; Hayyiratul Fatimah Mohd Zaid; Yang Tao; Chien Lye Chew; Dinh-Toi Chu; Man Kee Lam; Yeek-Chia Ho; Jun Wei Lim; Lai Chin Wei
Journal:  Bioengineered       Date:  2020-12       Impact factor: 3.269

Review 7.  When Molecules Meet in Water-Recent Contributions of Supramolecular Chemistry to the Understanding of Molecular Recognition Processes in Water.

Authors:  Stefan Kubik
Journal:  ChemistryOpen       Date:  2022-04       Impact factor: 2.630

8.  Elucidating dissociation activation energies in host-guest assemblies featuring fast exchange dynamics.

Authors:  Ronit Shusterman-Krush; Laura Grimm; Liat Avram; Frank Biedermann; Amnon Bar-Shir
Journal:  Chem Sci       Date:  2020-12-08       Impact factor: 9.825

  8 in total

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